Hi Billy, thank you for your reply. The checksum is indeed incorrect. But when I try to download the binary again, it still has the same checksum on my computer! I tried versions 5824 and 5848, with and without CUDA, and all versions return the same error on different packages. I don't know what to think! I'm open to any suggestions. Emmanuel Le 06/10/2025 à 19:21, Billy Poon a écrit :

Hi Emmanuel,

Can you verify the checksum of the installer? It looks like the file may be corrupted and could not be extracted correctly. The SHA256 checksum is

60fde2a0fc7c42cecdc2d0ae5e68079aa02908d22fac280486ea5463d4d71a15 Phenix-2.0-5824-Linux-x86_64.sh https://MailInBlack.univ-lyon1.fr/securelink/?url=http://Phenix-2.0-5824-Linux-x86_64.sh&key=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

If the checksum does not match, please re-download the file.

-- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Fax: (510) 486-5909 Web: https://phenix-online.org https://MailInBlack.univ-lyon1.fr/securelink/?url=https://phenix-online.org&key=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

On Thu, Oct 2, 2025 at 5:33 AM wrote:

Hi, on a linux ubuntu 22.04 distribution, when i'm trying to install latest Phenix nightly version 2.0-5824, i have the following error message:

[...] PREFIX=/home/ebettler/Soft/phenix-2.0-5824 Unpacking bootstrapper... Unpacking payload... entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. concurrent.futures.process._RemoteTraceback: ''' Traceback (most recent call last):   File "concurrent/futures/process.py", line 432, in wait_result_broken_or_wakeup   File "multiprocessing/connection.py", line 251, in recv TypeError: InvalidArchiveError.__init__() missing 1 required positional argument: 'msg' '''

The above exception was the direct cause of the following exception:

Traceback (most recent call last):   File "entry_point.py", line 244, in _constructor_extract_conda_pkgs   File "concurrent/futures/_base.py", line 449, in result   File "concurrent/futures/_base.py", line 401, in __get_result concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending.

The above exception was the direct cause of the following exception:

Traceback (most recent call last):   File "entry_point.py", line 691, in <module>   File "entry_point.py", line 681, in main   File "entry_point.py", line 582, in _constructor_subcommand   File "entry_point.py", line 246, in _constructor_extract_conda_pkgs RuntimeError: Failed to extract /home/ebettler/Soft/phenix-2.0-5824/pkgs/chem_data-2.0.5824-pyhe0d8492_0.conda: A process in the process pool was terminated abruptly while the future was running or pending. [PYI-197168:ERROR] Failed to execute script 'entry_point' due to unhandled exception!

What's wrong ? Any advice are welcome ! _______________________________________________ phenixbb mailing list -- [email protected] To unsubscribe send an email to [email protected] Unsubscribe: phenixbb-leave@%(host_name)s

Yes it is ! -rw-r--r-- 1 ebettler prabi 5,6G oct. 14 14:51 Phenix-2.0-5824-CUDA12-Linux-x86_64.sh -rw-r--r-- 1 ebettler prabi 2,8G oct. 14 14:48 'Phenix-2.0-5824-Linux-x86_64(1).sh' -rw-r--r-- 1 ebettler prabi 2,8G oct. 14 14:41 Phenix-2.0-5824-Linux-x86_64.sh -rwxr-xr-x 1 ebettler prabi 5,6G oct. 14 14:30 Phenix-2.0-5848-CUDA12-Linux-x86_64.sh -rw-r--r-- 1 ebettler prabi 3,1G oct. 16 09:35 phenix-installer-1.21.2-5419-intel-linux-2.6-x86_64-centos6.tar.gz Hi Emmanuel, How large are the downloaded files? They should be around 2.8 GB or 5.6 GB for the CUDA version. How fast is the download? -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 91R0183 Berkeley, CA 94720 Fax: (510) 486-5909 Web: https://phenix-online.orghttps://MailInBlack.univ-lyon1.fr/securelink/?url=https://phenix-online.org&key=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 On Thu, Oct 16, 2025 at 3:32 AM Emmanuel BETTLER mailto:[email protected]> wrote: Hi Billy, thank you for your reply. The checksum is indeed incorrect. But when I try to download the binary again, it still has the same checksum on my computer! I tried versions 5824 and 5848, with and without CUDA, and all versions return the same error on different packages. I don't know what to think! I'm open to any suggestions. Emmanuel Le 06/10/2025 à 19:21, Billy Poon a écrit : Hi Emmanuel, Can you verify the checksum of the installer? It looks like the file may be corrupted and could not be extracted correctly. The SHA256 checksum is 60fde2a0fc7c42cecdc2d0ae5e68079aa02908d22fac280486ea5463d4d71a15 Phenix-2.0-5824-Linux-x86_64.shhttps://MailInBlack.univ-lyon1.fr/securelink/?url=https://MailInBlack.univ-lyon1.fr&key=eyJsYW5nIjoiRlIiLCJ1cmwiOiJodHRwczovL01haWxJbkJsYWNrLnVuaXYtbHlvbjEuZnIvc2VjdXJlbGluay8_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 If the checksum does not match, please re-download the file. -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Fax: (510) 486-5909 Web: https://phenix-online.orghttps://MailInBlack.univ-lyon1.fr/securelink/?url=https://MailInBlack.univ-lyon1.fr&key=eyJsYW5nIjoiRlIiLCJ1cmwiOiJodHRwczovL01haWxJbkJsYWNrLnVuaXYtbHlvbjEuZnIvc2VjdXJlbGluay8_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 On Thu, Oct 2, 2025 at 5:33 AM mailto:[email protected]> wrote: Hi, on a linux ubuntu 22.04 distribution, when i'm trying to install latest Phenix nightly version 2.0-5824, i have the following error message: [...] PREFIX=/home/ebettler/Soft/phenix-2.0-5824 Unpacking bootstrapper... Unpacking payload... entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. entry_point.py:256: DeprecationWarning: Python 3.14 will, by default, filter extracted tar archives and reject files or modify their metadata. Use the filter argument to control this behavior. concurrent.futures.process._RemoteTraceback: ''' Traceback (most recent call last): File "concurrent/futures/process.py", line 432, in wait_result_broken_or_wakeup File "multiprocessing/connection.py", line 251, in recv TypeError: InvalidArchiveError.__init__() missing 1 required positional argument: 'msg' ''' The above exception was the direct cause of the following exception: Traceback (most recent call last): File "entry_point.py", line 244, in _constructor_extract_conda_pkgs File "concurrent/futures/_base.py", line 449, in result File "concurrent/futures/_base.py", line 401, in __get_result concurrent.futures.process.BrokenProcessPool: A process in the process pool was terminated abruptly while the future was running or pending. The above exception was the direct cause of the following exception: Traceback (most recent call last): File "entry_point.py", line 691, in <module> File "entry_point.py", line 681, in main File "entry_point.py", line 582, in _constructor_subcommand File "entry_point.py", line 246, in _constructor_extract_conda_pkgs RuntimeError: Failed to extract /home/ebettler/Soft/phenix-2.0-5824/pkgs/chem_data-2.0.5824-pyhe0d8492_0.conda: A process in the process pool was terminated abruptly while the future was running or pending. [PYI-197168:ERROR] Failed to execute script 'entry_point' due to unhandled exception! What's wrong ? Any advice are welcome ! _______________________________________________ phenixbb mailing list -- [email protected]mailto:[email protected] To unsubscribe send an email to [email protected]mailto:[email protected] Unsubscribe: phenixbb-leave@%(host_name)s