On Mon, Feb 27, 2012 at 7:17 AM, Pavel Afonine wrote:

if 5% generates more than 2000 reflections then 2000 is chosen as the max, which can be substantially less than 5% in some cases.

Pavel

PS.: It used to be 10% which I believe is much better. Someone must have changed this at some point and I overlooked it.

The defaults in phenix.refine are unchanged. The reflection file editor, however, changes the fraction to 5% and removes the upper limit. -Nat

The limit repeatedly confused (GUI) users who couldn't figure out why they only had 2% of reflections flagged when they asked for 5%. Since that particular GUI has been re-arranged, we could restore the limit but make it more obvious - in the past this was somewhat of a black box and the inconsistency was annoying. On Wed, Feb 29, 2012 at 6:43 AM, Paul Adams wrote:

Why did we remove the upper limit? It seems like a good thing.

On Feb 27, 2012, at 10:21 AM, Nathaniel Echols wrote:

...

On Mon, Feb 27, 2012 at 7:17 AM, Pavel Afonine wrote:

...

if 5% generates more than 2000 reflections then 2000 is chosen as the max, which can be substantially less than 5% in some cases.

Pavel

PS.: It used to be 10% which I believe is much better. Someone must have changed this at some point and I overlooked it.

The defaults in phenix.refine are unchanged.  The reflection file editor, however, changes the fraction to 5% and removes the upper limit.

-Nat _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

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