Greetings to all, Does anyone know how convert a .mtz file into a xplor format file? Thanks in advance Fulvio Saccoccia
Hi, I personally use Bart Hazes program sftools (within ccp4, not ccp4i): sftools & read myfile.mtz ! (or read myfile.mtz col 1 2 3 etc) write myfile.xpl stop The other possibility is to produce an ASCII listing of your mtz file (mtzdump) and modify this ASCII file. Fred. fulvio saccoccia wrote:
Greetings to all,
Does anyone know how convert a .mtz file into a xplor format file?
Thanks in advance
Fulvio Saccoccia
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Hi Fulvio, it's not a simple file format conversion. In this case MTZ file is supposed to contain Fourier map coefficients, and Xplor formatted file will contain Fourier image of electron density map (typically simply called "electron density map"). So this converson also involves a FT. Tool in PHENIX called phenix.mtz2map will do what you want: http://www.phenix-online.org/version_docs/dev-713/mtz2map.htm Type phenix.mtz2map in the command line without arguments too see the parameters: you may want to adjust some of them to get what you want (for example, by default it will output CCP4 formatted (binary) map). Try GUI to see if it's available in the GUI. Pavel. On 3/30/11 4:11 AM, fulvio saccoccia wrote:
Greetings to all,
Does anyone know how convert a .mtz file into a xplor format file?
Thanks in advance
Fulvio Saccoccia
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
CCP4's MTZ2VARIOUS is a good option for this. On 3/30/11 7:11 AM, fulvio saccoccia wrote:
Greetings to all,
Does anyone know how convert a .mtz file into a xplor format file?
Thanks in advance
Fulvio Saccoccia
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
phenix.reflection-file-converter does what you need.
P
On 30 March 2011 08:06, Phil Jeffrey
CCP4's MTZ2VARIOUS is a good option for this.
On 3/30/11 7:11 AM, fulvio saccoccia wrote:
Greetings to all,
Does anyone know how convert a .mtz file into a xplor format file?
Thanks in advance
Fulvio Saccoccia
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-- ----------------------------------------------------------------- P.H. Zwart Research Scientist Berkeley Center for Structural Biology Lawrence Berkeley National Laboratories 1 Cyclotron Road, Berkeley, CA-94703, USA Cell: 510 289 9246 BCSB: http://bcsb.als.lbl.gov PHENIX: http://www.phenix-online.org SASTBX: http://sastbx.als.lbl.gov -----------------------------------------------------------------
Hi Fulvio, for some reasons I mis-understood your question (I was thinking you want to convert MTZ file into Xplor map). Yes, Peter's suggestion will work just fine! Pavel. On 3/30/11 4:11 AM, fulvio saccoccia wrote:
Greetings to all,
Does anyone know how convert a .mtz file into a xplor format file?
Thanks in advance
Fulvio Saccoccia
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
participants (5)
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fulvio saccoccia -
Pavel Afonine -
Peter Zwart -
Phil Jeffrey -
Vellieux Frederic