Hi, Jobi, I think you may need to change the coot path for Phenix. It can be done easily through the GUI, File, preferences, Coot Path: Best, Zheng On Thu, Dec 5, 2013 at 3:36 AM, Nathaniel Echols wrote:

On Tue, Dec 3, 2013 at 10:54 PM, Jobichen Chacko wrote:

...

I recently upgraded to latest version of coot (version0.7.2). When I try to do the Real space refine zone option, coot is giving the following complaint (Refinement setup failure. Failed to find restraints for PROLYSILE).

But it works fine when I open coot separately from a terminal and read the pdb and mtz file.

Phenix will instruct Coot to load user-provided CIF files, but I didn't think we interfere with Coot's own restraints otherwise. Can you please send me the console output of Coot a) when launched from Phenix b) when launched by itself?

-Nat

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