Hi Tongqing, phenix.refine always outputs some maps by default. If you customize your own map in addition to the default ones, you need to change the labels, for example: mtz_label_amplitudes = "2FOFCWT_new" mtz_label_phases = "PH2FOFCWT_new" Otherwise your new custom map labels will conflict with the default ones. This was discussed on the board 10+ times. In future it will be taken care of automatically, but for the moment you need to change the labels manually. Pavel. On 11/11/09 8:03 AM, Zhou, Tongqing (NIH/VRC) [E] wrote:

Hi, All

I am having problem with the new 1.5.2. After few rounds of refinement, the program failed to write out maps. It ended with: "Sorry: Duplicate mtz_label_amplitudes:FOFCWT"

Here is the portion in my param file which worked fine before: electron_density_maps { map_format = *xplor map_coefficients_format = mtz *phs suppress = None map { mtz_label_amplitudes = "2FOFCWT" mtz_label_phases = "PH2FOFCWT" likelihood_weighted = True obs_factor = 2 calc_factor = 1 } map { mtz_label_amplitudes = "FOFCWT" mtz_label_phases = "PHFOFCWT" likelihood_weighted = True obs_factor = 1 calc_factor = 1 }

}

Thanks in advance for your help.

Tongqing

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