phenix.autosol and phenix.hyss now optimized for weak SAD data
Hi Phenix users! You might notice some big differences in HySS and AutoSol in the new 2014 versions of Phenix (starting with current nightly builds and the soon-to-be-released Phenix-1.8.5). The big changes are parallelization, the use of Phaser completion in HySS, iterative Phaser completion using maps and models in AutoSol, and on-the-fly optimization of parameters in AutoSol for cases with weak anomalous signal. Now HySS and AutoSol can solve structures with very weak SAD phase information that previous versions could not solve. More details will be in the Phenix newsletter that will come out shortly! You can see documentation on the new HySS at: http://phenix-online.org/version_docs/dev-1613/hyss.htm#anch8 and on the new AutoSol at: http://phenix-online.org/version_docs/dev-1613/autosol.htm#anch118 --Tom Terwilliger, Randy Read, Gábor Bunkóczi, Nat Echols
On Feb 4, 2014, at 15:55, "Terwilliger, Thomas C"
You might notice some big differences in HySS and AutoSol in the new 2014 versions of Phenix ... More details will be in the Phenix newsletter that will come out shortly!
I am interested to know if there are any publications to report these specific improvements - I did not gather as much from the newsletter? Or perhaps some sample data is available in the standard download? Otherwise I can consult the documentation. Thanks, -Bryan
Hi Bryan,
For now, the descriptions are in the documentation, yes. Also I plan to make some sample data available that shows the improvements. We do plan to publish the improvements but have not done so yet,
All the best,
Tom T
________________________________________
From: [email protected] [[email protected]] on behalf of Bryan Lepore [[email protected]]
Sent: Wednesday, February 05, 2014 6:02 PM
To: PHENIX user mailing list
Subject: Re: [phenixbb] phenix.autosol and phenix.hyss now optimized for weak SAD data
On Feb 4, 2014, at 15:55, "Terwilliger, Thomas C"
You might notice some big differences in HySS and AutoSol in the new 2014 versions of Phenix ... More details will be in the Phenix newsletter that will come out shortly!
I am interested to know if there are any publications to report these specific improvements - I did not gather as much from the newsletter? Or perhaps some sample data is available in the standard download? Otherwise I can consult the documentation. Thanks, -Bryan _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
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Bryan Lepore -
Terwilliger, Thomas C