Hi, just dont give it to phenix in the next run ! i dont really understand the question 2011/7/13 Haytham Wahba

Dear All

How to get rid of restraints_edite.params in the following run of phenix.refine, i mean after using it in previous run. and what is .def files. and bond.slack

Haytham Udem Biochemi Canada

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On Wed, Jul 13, 2011 at 5:43 AM, Haytham Wahba wrote:

How to get rid of restraints_edite.params in the following run of phenix.refine, i mean after using it in previous run. and what is .def files. and bond.slack

(This ended up being answered - I hope - off-list, but the solution may be of general interest since the current behavior is potentially confusing and not documented yet:) The phenix.refine GUI doesn't output the .def file because it isn't suitable for using in the GUI - I turned this feature off to avoid confusion. My guess is the restraint parameters are being automatically loaded because you set them as default for your project. To turn this off, go to the main window, click the "Settings" button above the project list, then click "Manage default files" in the window that appears. You should see the restraints file in the list; select it and click "Remove from list" to remove it. (It won't actually delete the file, so you can still load it manually if you want.) I'll add this to the GUI manual and frequently asked questions list. -Nat