Interpreting Cd atoms
Hello, I'm trying to refine a structure with Cadmium bound. Is there a standard way to define "energy type symbols"? Thanks, James Number of atoms with unknown nonbonded energy type symbols: 14 "CD CD D 1 " "CD CD D 2 " "CD CD D 3 " "CD CD D 4 " "CD CD D 5 " "CD CD D 6 " "CD CD D 7 " "CD CD D 8 " "CD CD D 9 " "CD CD D 10 " ... (remaining 4 not shown) Time building chain proxies: 2.36, per 1000 atoms: 1.27 Sorry: Fatal problems interpreting PDB file: Number of atoms with unknown nonbonded energy type symbols: 14 Please edit the PDB file to resolve the problems and/or supply a CIF file with matching restraint definitions. Note that elbow.builder is available to create restraint definitions.
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James Fraser