Molecular replacement of cyclic polypeptide with non-standard amino acid
Dear all, I have collected an XRD data from a crystal of cyclic polypeptide with non-standard amino acid (2,4-diaminobutyric acid). Is it possible to solve the structure by molecular replacement? Or does anyone have any suggestion for solving the structure? Thank you very much for your kind help. --- Best regards, Ariela Samantha PhD Candidate Department of Structural Biology School of Molecular Sciences The University of Western Australia Bayliss Building room 4.26 Phone +61 8 6488 ext. 3163
Dear Ariela,
in case your resolution is better than 1.2A, you can use direct
methods. They might work up to 1.5'ish A resolution.
MR requires a structural similarity between the search model and the
target. For a cyclic polypeptide, this might be tricky to predict. You
can, of course, try MR with a single, rigid amino acid, either directly
with Phaser, or as part of Arcimboldo.
Best,
Tim
On Thu, 10 Mar 2022 04:15:34 +0000
Ariela Samantha
Dear all,
I have collected an XRD data from a crystal of cyclic polypeptide with non-standard amino acid (2,4-diaminobutyric acid). Is it possible to solve the structure by molecular replacement? Or does anyone have any suggestion for solving the structure? Thank you very much for your kind help.
--- Best regards,
Ariela Samantha PhD Candidate Department of Structural Biology School of Molecular Sciences The University of Western Australia Bayliss Building room 4.26 Phone +61 8 6488 ext. 3163
-- -- Tim Gruene Head of the Centre for X-ray Structure Analysis Faculty of Chemistry University of Vienna Phone: +43-1-4277-70202 GPG Key ID = A46BEE1A
participants (2)
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Ariela Samantha
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Tim Gruene