Yes please! I can replace that module only! Thanks Pietro ________________________________________ From: [email protected] [[email protected]] On Behalf Of Dr G. Bunkoczi [[email protected]] Sent: 06 July 2011 15:46 To: [email protected] Cc: PHENIX user mailing list Subject: Re: [phenixbb] phenix.mr_rosetta: Inconsistent query numbering Hi Pietro, the parser complains because sequence positions are numbered in an unexpected way, e.g.: Q Japanin 1 ------- Q Consensus 17 ~~~~~~c I do not fully understand the meaning of these numbers, but until now in all sample .hhr-files these numbers were identical and were stored only once (after a consistency check). This is the check that now fails. I am wondering why these are suddenly different. Have you changed a setting on HHPRED that could be the cause? (It would be great to see an .hhr format description to see whether these numbers are supposed to be identical or not, but I have not been able to find it yet.) Anyway, from the parser point of view the solution is very easy. Both set of numbers can be stored, and there is no need for a consistency check. I have made this change and will be available in tomorrow's version. However, since this is a very small change, I am happy to send you the affected module, so that you can go ahead without reinstalling the full suite. Please get in touch if this would be more convenient. Best wishes, Gabor On Jul 5 2011, Thomas C. Terwilliger wrote:

Hi Pietro,

There is something that phenix.mr_model_preparation cannot read in Japanin.hhr (attached):

phenix.mr_model_preparation Japanin.hhr

gives the same error. I'll copy Gabor Bunkoczi and see if he can help with this.

All the best, Tom T

...

...

Dear all,

my run of phenix.mr_rosetta stops with:

******************* ERROR ENDING *************** Inconsistent query numbering

******************* ERROR ENDING ***************

I attach script and logfiles.

Any suggestions?

Thanks

Pietro _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb

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