Hi Wim, Sorry for the late reply, I must have lost track of this one. With the official release, 1.17.1-3660, or the latest 1.18 release candidate, there should be log files from the installation In the "base_tmp" directory. Can you send those to me? They would have more detailed information about the nature of the failure. Also, which linux distribution and version are you using? Thanks! -- Billy K. Poon Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Tel: (510) 486-5709 Fax: (510) 486-5909 Web: https://phenix-online.org On Fri, Feb 21, 2020 at 9:11 AM Wim Burmeister wrote:

Hello,

I am trying to install phenix on a Debian 9 linux machine, but I get systematically an error message from install :

# ./install --prefix=/home/wpb/phenix/

========================================================================== Phenix Installation

version: 1.12-2829 machine type: intel-linux-2.6-x86_64 OS version: 4.9.0-12-amd64 destination: /home/wpb/phenix/phenix-1.12-2829 # of processors: 8

========================================================================= Configuring Phenix components. Traceback (most recent call last): File "./bin/install.py", line 275, in <module> installer(sys.argv[1:]).install() File "/home/wpb/mounts/ibs-equipe-burmeister/phenix/phenix-installer-1.12-2829-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 197, in install self.install_from_binary() File "/home/wpb/mounts/ibs-equipe-burmeister/phenix/phenix-installer-1.12-2829-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 319, in install_from_binary self.reconfigure(log=log) File "/home/wpb/mounts/ibs-equipe-burmeister/phenix/phenix-installer-1.12-2829-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/install_distribution.py", line 485, in reconfigure call(args=args, log=log, verbose=self.options.verbose) File "/home/wpb/mounts/ibs-equipe-burmeister/phenix/phenix-installer-1.12-2829-intel-linux-2.6-x86_64-centos6/lib/libtbx/auto_build/installer_utils.py", line 81, in call raise RuntimeError("Call to '%s' failed with exit code %d" % (args, rc)) RuntimeError: Call to '/home/wpb/phenix/phenix-1.12-2829/base/bin/python /home/wpb/phenix/phenix-1.12-2829/modules/cctbx_project/libtbx/configure.py --current_working_directory /home/wpb/phenix/phenix-1.12-2829/build --command_version_suffix 1.12-2829 phenix phaser solve_resolve labelit dials xia2 iota prime' failed with exit code 126

Does this ring a bell for somebody ? There is an old post (2016) with the same problem, but without an answer. I tried to install the most recent version of phenix or an older one (down to v10), also chosing directories with shorter paths, but the problem is always the same. Best regards Wim

-- Wim Burmeister

Professeur Institut de Biologie Structurale (IBS) CIBB 71 avenue des Martyrs / CS 20192 38044 Grenoble Cedex 9, FRANCE E-mail: [email protected] Tel: +33 (0) 457 42 87 41 Fax: +33 (0) 476 20 94 00 website http://www.ibs.fr/research/research-groups/viral-replication-machines-group-... map https://www.openstreetmap.org/?mlat=45.20762&mlon=5.69255#map=17/45.20762/5.69255

Changement climatique : «Les autres combats n’ont aucun sens si celui-là est perdu» (*Aurélien Barrau)*

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