Migrating all phenix projects to a new location without breaking all of the file paths.
Hi, Does anyone have instructions I can follow for how to move all of my phenix directories to a new location without messing up all of the file paths in each project. Our IT department wants to relocate files on our server which will change all of the top directory locations to something new so before that happens I think there is a way I can have a file that will allow me to recreate all of the phenix projects in the GUI with the new file paths but I can't recall how to do it. Thanks in advance for your assistance. Best wishes, Paul Institute Senior Research Scientist MD Anderson Cancer Center 1881 East Road Houston TX 77054 USA Tel: 732 397 8539 email: [email protected] The information contained in this e-mail message may be privileged, confidential, and/or protected from disclosure. This e-mail message may contain protected health information (PHI); dissemination of PHI should comply with applicable federal and state laws. If you are not the intended recipient, or an authorized representative of the intended recipient, any further review, disclosure, use, dissemination, distribution, or copying of this message or any attachment (or the information contained therein) is strictly prohibited. If you think that you have received this e-mail message in error, please notify the sender by return e-mail and delete all references to it and its contents from your systems.
HI Paul,
You can move files under Phenix Projects / Move Project. Perhaps this will
suffice.
Robert Munoz
On Fri, Mar 12, 2021 at 8:21 AM Leonard,Paul G
Hi,
Does anyone have instructions I can follow for how to move all of my phenix directories to a new location without messing up all of the file paths in each project.
Our IT department wants to relocate files on our server which will change all of the top directory locations to something new so before that happens I think there is a way I can have a file that will allow me to recreate all of the phenix projects in the GUI with the new file paths but I can’t recall how to do it.
Thanks in advance for your assistance.
Best wishes,
Paul
Institute Senior Research Scientist
MD Anderson Cancer Center
1881 East Road
Houston TX 77054
USA
Tel: 732 397 8539
email: [email protected]
The information contained in this e-mail message may be privileged, confidential, and/or protected from disclosure. This e-mail message may contain protected health information (PHI); dissemination of PHI should comply with applicable federal and state laws. If you are not the intended recipient, or an authorized representative of the intended recipient, any further review, disclosure, use, dissemination, distribution, or copying of this message or any attachment (or the information contained therein) is strictly prohibited. If you think that you have received this e-mail message in error, please notify the sender by return e-mail and delete all references to it and its contents from your systems. _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
Hi Paul,
Depending on how many projects you have, you can also copy the project
directories to the new location and then import the projects in the GUI.
In the menu bar, there is a Projects menu item and under that menu, there
is an "Import project" item. You will want to remove the existing projects
from the database first.
If you have many projects, there is a command-line tool called
"phenix.import_project". The arguments are the project directory and the
Phenix GUI database directory. On macOS, the Phenix GUI database is located
in ~/Library/Preferences/Phenix. On linux, the database is in ~/Phenix. And
on Windows, it is ~\Application Data\Phenix. Before doing anything, you
should back up this directory. Let me know if you need help with setting up
a script to import many projects. Thanks!
--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Fax: (510) 486-5909
Web: https://phenix-online.org
On Fri, Mar 12, 2021 at 10:17 AM Robert Munoz
HI Paul,
You can move files under Phenix Projects / Move Project. Perhaps this will suffice.
Robert Munoz
On Fri, Mar 12, 2021 at 8:21 AM Leonard,Paul G
wrote: Hi,
Does anyone have instructions I can follow for how to move all of my phenix directories to a new location without messing up all of the file paths in each project.
Our IT department wants to relocate files on our server which will change all of the top directory locations to something new so before that happens I think there is a way I can have a file that will allow me to recreate all of the phenix projects in the GUI with the new file paths but I can’t recall how to do it.
Thanks in advance for your assistance.
Best wishes,
Paul
Institute Senior Research Scientist
MD Anderson Cancer Center
1881 East Road
Houston TX 77054
USA
Tel: 732 397 8539
email: [email protected]
The information contained in this e-mail message may be privileged, confidential, and/or protected from disclosure. This e-mail message may contain protected health information (PHI); dissemination of PHI should comply with applicable federal and state laws. If you are not the intended recipient, or an authorized representative of the intended recipient, any further review, disclosure, use, dissemination, distribution, or copying of this message or any attachment (or the information contained therein) is strictly prohibited. If you think that you have received this e-mail message in error, please notify the sender by return e-mail and delete all references to it and its contents from your systems. _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
participants (3)
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Billy Poon
-
Leonard,Paul G
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Robert Munoz