Fatal Error: Incomplete libtbx environment!
Hi, I just installed Phenix 1.3b, however got this error message when I tried to run phenix. ******************************************* Fatal Error: Incomplete libtbx environment! ******************************************* Please re-run the libtbx/configure.py command. My system is: 2.6.23.8-34.fc7 i686 Here is what I did: 1) downloaded phenix-installer-1.3b-rc6-intel-linux-2.6.tar 2) tar -xvf ... 3) In directory: phenix-installer-1.3b/, execute ./install 4) moved phenix-1.3b-rc6/ from /usr/local to /usr/local/progs where all of my programs dwell 5) source phenix_env in: /usr/local/progs/Phenix/phenix-1.3b-rc6 6) then run: ./phenix, and got the above message 7) as root go to /libtbx, chmod +x configure.py, and ./configure.py (I don't know about python, and my Python is 2.5), it hangs there for very long (>10 min) with another error: ./configure.py: line 3: syntax error near unexpected token `(' ./configure.py: line 3: `def run():' I checked the bb for help but didn't find any useful info (not finished reading all the messages). I wonder whether someone could help! Thanks and happy new year! Yongfu
Please re-run the libtbx/configure.py command.
I think you just have to invoke it with python /path/to/libtbx/configure.py Yong-Fu Li wrote:
Hi,
I just installed Phenix 1.3b, however got this error message when I tried to run phenix.
******************************************* Fatal Error: Incomplete libtbx environment! ******************************************* Please re-run the libtbx/configure.py command.
My system is: 2.6.23.8-34.fc7 i686
Here is what I did: 1) downloaded phenix-installer-1.3b-rc6-intel-linux-2.6.tar 2) tar -xvf ... 3) In directory: phenix-installer-1.3b/, execute ./install 4) moved phenix-1.3b-rc6/ from /usr/local to /usr/local/progs where all of my programs dwell 5) source phenix_env in: /usr/local/progs/Phenix/phenix-1.3b-rc6 6) then run: ./phenix, and got the above message 7) as root go to /libtbx, chmod +x configure.py, and ./configure.py (I don't know about python, and my Python is 2.5), it hangs there for very long (>10 min) with another error:
./configure.py: line 3: syntax error near unexpected token `(' ./configure.py: line 3: `def run():'
I checked the bb for help but didn't find any useful info (not finished reading all the messages). I wonder whether someone could help!
Thanks and happy new year!
Yongfu
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Hi Yongfu,
4) moved phenix-1.3b-rc6/ from /usr/local to /usr/local/progs where all of my programs dwell
That's the problem. The phenix installation connect be simply relocated by moving the directory. Use the --prefix option to tell the installer where you'd like the installation to go, e.g. ./install --prefix=/usr/local/progs This will ensure that all paths are setup correctly. Please be sure to rm -rf /usr/local/progs/phenix-1.3b-rc6 your initial installation before re-running the ./install command. Ralf
participants (3)
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Ralf W. Grosse-Kunstleve
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William Scott
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Yong-Fu Li