Hi, Did you set the path to Coot in the Phenix preferences? Also, check some info here: https://www.phenix-online.org/documentation/coot.html Dorothee On Thu, Feb 11, 2021 at 3:40 PM Badmalia, Maulik wrote:

hello team phenix,

I hope this email finds you well.

I recently downloaded phenix for analysing our cryoEM data, before moving to the data analysis I decided to try the tutorial. I decided to use the autosharpen option first, I was able to access the tutorial but when I clicked on coot I repeatedly got a message saying that "Sorry: the 'coot' command could not be located.

We have installed Coot to run on a CentOS platform and has the latest version of Coot on the system. I am a novice with linux and phenix. So any help in this regard would be highly appreciated. Do let me know if you have any questions.

Regards, Maulik

*Maulik D. Badmalia*

*Postdoctoral Researcher*

*Laboratory of Medicinal Biophysics*

*Alberta RNA Research and Training Institute*

*Dept. of Chemistry & Biochemistry*

*University of Lethbridge, Lethbridge, AB, Canada*

_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]

-- Research Scientist, Molecular Biophysics and Integrated Bioimaging Lawrence Berkeley National Laboratory 1 Cyclotron Road, M/S 33R0345 Berkeley, CA 94720 Tel: (510) 486-5709 Fax: (510) 486-5909 Web: https://phenix-online.org