in doing SAD phasing with the option: input_partpdb_file=MR.pdb Is it assumed MR.pdb is already located in the cell, or is it a model to be used in MR assisted by information from the heavy atom sites? Thanks, eab
On Mon, Jul 2, 2012 at 11:40 AM, Edward A. Berry
in doing SAD phasing with the option: input_partpdb_file=MR.pdb
Is it assumed MR.pdb is already located in the cell
Yes, you have to run the MR separately first, then the model phases are used to find the anomalous substructure. -Nat
Hi Ed, The option in autosol: input_partpdb_file=MR.pdb assumes you have already placed MR.pdb in the cell. All the best, Tom T ________________________________________ From: [email protected] [[email protected]] on behalf of Edward A. Berry [[email protected]] Sent: Monday, July 02, 2012 12:40 PM To: PHENIX user mailing list Subject: [phenixbb] Question about mr-sad in doing SAD phasing with the option: input_partpdb_file=MR.pdb Is it assumed MR.pdb is already located in the cell, or is it a model to be used in MR assisted by information from the heavy atom sites? Thanks, eab _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
participants (3)
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Edward A. Berry -
Nathaniel Echols -
Terwilliger, Thomas C