GUI MR_Rosetta without explicit search model?
Dear colleagues, I am trying to set up an MR_Rosetta run using the GUI of Phenix 1.7.3. Unlike the command line version, it doesn't seem to accept either Robetta fragment files or alignment files from the hhpred server as the sole input but it keeps on asking for a pdb-file as search model. Is this behaviour intended or am I missing something? Best regards, Uli Gohlke --------------------------------------------------------------------------- dr ulrich gohlke staff scientist - macromolecular structure and interaction max-delbrück-center for molecular medicine (mdc) +49 30 9406 - 2725 (w) +49 30 9406 - 2548 (fax) [email protected] mailto:[email protected] http://www.mdc-berlin.de/en/research/research_teams/macromolecular_structure... http://www.mdc-berlin.de/en/research/research_teams/macromolecular_structure...
On Fri, Dec 16, 2011 at 2:49 AM, Gohlke, Ulrich
I am trying to set up an MR_Rosetta run using the GUI of Phenix 1.7.3. Unlike the command line version, it doesn’t seem to accept either Robetta fragment files or alignment files from the hhpred server as the sole input but it keeps on asking for a pdb-file as search model. Is this behaviour intended or am I missing something?
This is the intended behavior - unfortunately it is not the correct behavior! I had not realized that the program would automatically download search models from the PDB if they were present in the hhpred file. To fix this, edit the file $PHENIX/phenix/phenix/rosetta/mr_rosetta.py and comment out lines 4764 and 4765, like this: # if (len(params.input_files.search_models) == 0) : # raise Sorry("No search models provided!") I'll patch the installers with this when I get into lab. -Nat
participants (2)
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Gohlke, Ulrich -
Nathaniel Echols