Adjusting pixel size using phenix
Hi, Is there a way to adjust pixel size of a volume in phenix? I have been using ResolveCryoEM and I would now like to calibrate the pixel of the resulting map. This could be done in chimera but requires resampling the map to a RELION map of the correct pixel size. Best wishes, Noor
Hi Noor,
Yes, use map_box and change the unit cell parameters but keep everything
else the same and the pixel sizes will change proportionally.
-Tom T
On Thu, Jul 23, 2020 at 09:00 Noor Agip
Hi,
Is there a way to adjust pixel size of a volume in phenix? I have been using ResolveCryoEM and I would now like to calibrate the pixel of the resulting map. This could be done in chimera but requires resampling the map to a RELION map of the correct pixel size.
Best wishes, Noor _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected]
-- Thomas C Terwilliger Laboratory Fellow, Los Alamos National Laboratory Senior Scientist, New Mexico Consortium 100 Entrada Dr, Los Alamos, NM 87544 Email: [email protected] Tel: 505-431-0010
Hi Tom, Thank you, it worked great. Best wishes, Noor
On 23 Jul 2020, at 16:09, Tom Terwilliger
wrote: Hi Noor, Yes, use map_box and change the unit cell parameters but keep everything else the same and the pixel sizes will change proportionally. -Tom T
On Thu, Jul 23, 2020 at 09:00 Noor Agip
mailto:[email protected]> wrote: Hi, Is there a way to adjust pixel size of a volume in phenix? I have been using ResolveCryoEM and I would now like to calibrate the pixel of the resulting map. This could be done in chimera but requires resampling the map to a RELION map of the correct pixel size.
Best wishes, Noor _______________________________________________ phenixbb mailing list [email protected] mailto:[email protected] http://phenix-online.org/mailman/listinfo/phenixbb http://phenix-online.org/mailman/listinfo/phenixbb Unsubscribe: [email protected] mailto:[email protected] -- Thomas C Terwilliger Laboratory Fellow, Los Alamos National Laboratory Senior Scientist, New Mexico Consortium 100 Entrada Dr, Los Alamos, NM 87544 Email: [email protected] mailto:[email protected] Tel: 505-431-0010
participants (2)
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Noor Agip
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Tom Terwilliger