Has anybody encountered this error when running ERRASER in Phenix? If so,
any suggestions for how to fix this would be greatly appreciated!
--------------------------------------------------------------------------
*TypeError : ('__init__() takes at least 3 arguments (1 given)',
This would appear to be related to a long-standing bug in Python 2.7: see https://bugs.python.org/issue9400. Whatever the *actual* error is is being obscured by the fact that the error doesn't get properly handed back from the sub-process. Looks like it might be somewhat non-trivial to get to the bottom of. On 2017-05-12 18:13, Eric Montemayor wrote:
Has anybody encountered this error when running ERRASER in Phenix? If so, any suggestions for how to fix this would be greatly appreciated!
--------------------------------------------------------------------------
TypeError : ('__init__() takes at least 3 arguments (1 given)',
, ()) Traceback (most recent call last): File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/App.py", line 784, in OnTimer self.run_manager.update(update_backgrounded=False) File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/ProcessControl.py", line 213, in update process.update() File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/phenix/wxGUI2/ProcessControl.py", line 136, in update self._process.update() File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/cctbx_project/libtbx/runtime_utils.py", line 306, in update (error, traceback_info) = easy_pickle.load(self.error_file) File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/modules/cctbx_project/libtbx/easy_pickle.py", line 82, in load return cPickle.loads(_open(file_name, "rb").read()) TypeError: ('__init__() takes at least 3 arguments (1 given)',
, ()) --------------------------------------------------------------------------
--
Eric J. Montemayor, Ph.D. Associate Scientist University of Wisconsin-Madison 145 Biochemistry Laboratories 433 Babcock Drive Madison, WI 53706 512.784.5981 http://about.me/montemayor [1] https://www.linkedin.com/in/ericmontemayor [2]
Links: ------ [1] http://about.me/montemayor [2] https://www.linkedin.com/pub/eric-montemayor/63/121/98b
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Thanks Tristan,
I had a few failed jobs in my "job history" tab that were still marked as
running. I deleted them and now ERRASER works again. So hopefully that
was (somehow) the issue.
-Eric
On Fri, May 12, 2017 at 2:59 PM, Tristan Croll
This would appear to be related to a long-standing bug in Python 2.7: see https://bugs.python.org/issue9400. Whatever the *actual* error is is being obscured by the fact that the error doesn't get properly handed back from the sub-process. Looks like it might be somewhat non-trivial to get to the bottom of.
On 2017-05-12 18:13, Eric Montemayor wrote:
Has anybody encountered this error when running ERRASER in Phenix? If so, any suggestions for how to fix this would be greatly appreciated!
------------------------------------------------------------ --------------
TypeError : ('__init__() takes at least 3 arguments (1 given)',
, ()) Traceback (most recent call last): File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/ modules/phenix/wxGUI2/App.py", line 784, in OnTimer self.run_manager.update(update_backgrounded=False) File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/ modules/phenix/wxGUI2/ProcessControl.py", line 213, in update process.update() File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/ modules/phenix/wxGUI2/ProcessControl.py", line 136, in update self._process.update() File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/ modules/cctbx_project/libtbx/runtime_utils.py", line 306, in update (error, traceback_info) = easy_pickle.load(self.error_file) File "/opt/sbgrid/i386-mac/phenix/1.11.1-2575/phenix-1.11.1-2575/ modules/cctbx_project/libtbx/easy_pickle.py", line 82, in load return cPickle.loads(_open(file_name, "rb").read()) TypeError: ('__init__() takes at least 3 arguments (1 given)',
, ()) ------------------------------------------------------------ --------------
--
Eric J. Montemayor, Ph.D. Associate Scientist University of Wisconsin-Madison 145 Biochemistry Laboratories 433 Babcock Drive Madison, WI 53706 512.784.5981 http://about.me/montemayor [1] https://www.linkedin.com/in/ericmontemayor [2]
Links: ------ [1] http://about.me/montemayor [2] https://www.linkedin.com/pub/eric-montemayor/63/121/98b
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-- Eric J. Montemayor, Ph.D. Associate Scientist University of Wisconsin-Madison 145 Biochemistry Laboratories 433 Babcock Drive Madison, WI 53706 512.784.5981 http://about.me/montemayor https://www.linkedin.com/in/ericmontemayor https://www.linkedin.com/pub/eric-montemayor/63/121/98b
participants (2)
-
Eric Montemayor -
Tristan Croll