1) The output coot is version 0.6.1 2) I don't see anything extra when compared to a coot window I open from a terminal. _ Subhangi On Fri, Jun 25, 2010 at 5:27 PM, Nathaniel Echols wrote:

On Fri, Jun 25, 2010 at 2:23 PM, Subhangi Ghosh wrote:

...

I'm using Phenix version 1.6.2-432. When I run phenix.refine, coot opens up, but my molecule does not load. If I open in coot after refinement, molecule still does not load in coot. Please help.

Two questions:

1) What is the output of "coot --version"? 2) Do you see any additional buttons on the Coot toolbar?

-Nat

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Oh ok. Is this what you were looking for? COOT_PREFIX is /apps/coot/current /apps/coot/current/bin/coot-real --version 0.6.2-pre-1 (revision 2981) [with guile 1.6.8 embedded] --Subhangi On Fri, Jun 25, 2010 at 6:33 PM, Nathaniel Echols wrote:

On Fri, Jun 25, 2010 at 2:33 PM, Subhangi Ghosh wrote:

...

1) The output coot is version 0.6.1

I need the full output of the command "coot --version" - just knowing the version number tells me nothing.

thanks, Nat

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Thanks! On Fri, Jun 25, 2010 at 6:46 PM, Nathaniel Echols wrote:

On Fri, Jun 25, 2010 at 3:42 PM, Subhangi Ghosh wrote:

...

/apps/coot/current/bin/coot-real --version 0.6.2-pre-1 (revision 2981) [with guile 1.6.8 embedded]

This is the problem: it doesn't have Python. If you download Coot from Paul Emsley's web page, you usually need one of the packages with "python" in the file name. If "coot --version" does not print any mention of Python, it won't work with Phenix.

I guess I need to add this to the FAQ list.

-Nat

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