Hi everyone,
I have a dimmer protein diffract to 1.6 A resolution.
After processing the data, the Linear R-fac was 0.26/0.038 (last/all), the
data quality seems good.
This data can be processed to P3 or P321 with the R-fac almost the same
After that, I used Bales to do the MR, two solutions were found in P32
(dimmer) and one in P32 21 (monomer)
Then, I refine the structure using phenix.refine in both P32 and P32 21
sets, but the R/Rfree stopped at 0.19/0.25 and never goes down.
Rfree 25% seems a little bit too high for a 1.6 resolution data.
However, if I treat the P32 data as a twin (with twin law h,-h-k,-l ), the
R/Rfree can down to 0.12/0.18.
I use P3 to run the phenix.xtriage (see bellows), it looks like the L-test
says it is not a twin data.
So, I am wondering is it a twin data or not?
The results are as follow.
"Twinning and intensity statistics summary (acentric data):
---------------------------------------------------------------------------
Statistics independent of twin laws
- /<I>^2 : 2.105
- <F>^2/
Hi, This
However, if I treat the P32 data as a twin (with twin law h,-h-k,-l ), the R/Rfree can down to 0.12/0.18.
and this
Even though no twinning is suspected, it might be worthwhile carrying out a refinement using a dedicated twin target anyway, as twinned structures with low twin fractions are difficult to distinguish from non-twinned structures.
suggest that your data is twinned. The lower R values are convincing. Do an R vs R analysis by loading up a model as well in xtriage to get a clue about the extend of the pseudo symmetry. Cheers, P
participants (2)
-
lauren
-
Peter Zwart