Dear all, Could anybody confirm that Phenix does or does not run on OS X 10.8 Mountain Lion, please? Best wishes, Alex -- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
Yes. You only need to install XQuartz.app for Coot to run, but everything
else works right out of the box. Apple decided not to ship X11.app with Mac
OS X anymore.
If you happen to use one of the latest Macbooks, as it is my case, you
might experience weird graphical artifacts when using the discrete graphics
processor (GeForce 650M) with XQuartz. Just switch to the integrated
graphics until Nvidia fixes the issue.
Good luck,
Jon
2012/8/3 Alexander Batyuk
Dear all,
Could anybody confirm that Phenix does or does not run on OS X 10.8 Mountain Lion, please?
Best wishes,
Alex
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Biophysics Unit (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre +34656756888
one of the latest MacBooks do you mean the retina display one ?
Jürgen
On Aug 3, 2012, at 7:30 AM, Jon Agirre wrote:
Yes. You only need to install XQuartz.app for Coot to run, but everything else works right out of the box. Apple decided not to ship X11.app with Mac OS X anymore.
If you happen to use one of the latest Macbooks, as it is my case, you might experience weird graphical artifacts when using the discrete graphics processor (GeForce 650M) with XQuartz. Just switch to the integrated graphics until Nvidia fixes the issue.
Good luck,
Jon
2012/8/3 Alexander Batyuk
Both the retina AND regular Macbook Pros with the NVIDIA 650M chip
experience this issue.
The XQuartz guys have faced numerous bug reports due to similar problems in
the past, and they always throw in the "it's a driver issue" answer and
close the ticket. So far, they have always been right and subsequent driver
updates solved the problems.
Jon
2012/8/3 Bosch, Juergen
one of the latest MacBooks do you mean the retina display one ? Jürgen
On Aug 3, 2012, at 7:30 AM, Jon Agirre wrote:
Yes. You only need to install XQuartz.app for Coot to run, but everything else works right out of the box. Apple decided not to ship X11.app with Mac OS X anymore.
If you happen to use one of the latest Macbooks, as it is my case, you might experience weird graphical artifacts when using the discrete graphics processor (GeForce 650M) with XQuartz. Just switch to the integrated graphics until Nvidia fixes the issue.
Good luck,
Jon
2012/8/3 Alexander Batyuk
Dear all,
Could anybody confirm that Phenix does or does not run on OS X 10.8 Mountain Lion, please?
Best wishes,
Alex
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Biophysics Unit (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre +34656756888 _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
...................... Jürgen Bosch Johns Hopkins University Bloomberg School of Public Health Department of Biochemistry & Molecular Biology Johns Hopkins Malaria Research Institute 615 North Wolfe Street, W8708 Baltimore, MD 21205 Office: +1-410-614-4742 Lab: +1-410-614-4894 Fax: +1-410-955-2926 http://lupo.jhsph.edu
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Biophysics Unit (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre +34656756888
Thanks! I'm using 2010 Macbook Air (with Snow Leopard) and it has discrete GPU Nvidia 320M. I'll report if there are any troubles after update. Best wishes, Alex On 3 Aug 2012, at 13:30, Jon Agirre wrote:
Yes. You only need to install XQuartz.app for Coot to run, but everything else works right out of the box. Apple decided not to ship X11.app with Mac OS X anymore.
If you happen to use one of the latest Macbooks, as it is my case, you might experience weird graphical artifacts when using the discrete graphics processor (GeForce 650M) with XQuartz. Just switch to the integrated graphics until Nvidia fixes the issue.
Good luck,
Jon
2012/8/3 Alexander Batyuk
Dear all,
Could anybody confirm that Phenix does or does not run on OS X 10.8 Mountain Lion, please?
Best wishes,
Alex
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Biophysics Unit (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre +34656756888 _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
Sorry for bringing up such an old thread, but I've finally discovered what
causes the flickering in OS X 10.8. It looks like XQuartz.app misbehaves
with stereo hardware. I've been able to reproduce the problem in OS X 10.6
and XQuartz.app, launching pymol with stereo enabled in an iMac with Nvidia
hardware.
In OS X 10.8, you're stuck with XQuartz.app, but to avoid the problem while
using the discrete graphics chip, simply launch your software without
stereo support. In the case of pymol, I've defined an alias for it (alias
pymol="pymol -M") in ~/.bash_profile
Jon
2012/8/3 Alexander Batyuk
Thanks! I'm using 2010 Macbook Air (with Snow Leopard) and it has discrete GPU Nvidia 320M. I'll report if there are any troubles after update.
Best wishes,
Alex
On 3 Aug 2012, at 13:30, Jon Agirre wrote:
Yes. You only need to install XQuartz.app for Coot to run, but everything else works right out of the box. Apple decided not to ship X11.app with Mac OS X anymore.
If you happen to use one of the latest Macbooks, as it is my case, you might experience weird graphical artifacts when using the discrete graphics processor (GeForce 650M) with XQuartz. Just switch to the integrated graphics until Nvidia fixes the issue.
Good luck,
Jon
2012/8/3 Alexander Batyuk
Dear all,
Could anybody confirm that Phenix does or does not run on OS X 10.8 Mountain Lion, please?
Best wishes,
Alex
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Biophysics Unit (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre +34656756888 _______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Alex Batyuk The Plueckthun Lab www.bioc.uzh.ch/plueckthun
_______________________________________________ phenixbb mailing list [email protected] http://phenix-online.org/mailman/listinfo/phenixbb
-- Jon Agirre, PhD Unit of Biophysics (CSIC-UPV/EHU) http://www.ehu.es/jon.agirre http://sourceforge.net/projects/projectrecon/ +34656756888
participants (3)
-
Alexander Batyuk -
Bosch, Juergen -
Jon Agirre