Hi Boaz, phenix.map_model_cc should do it, I'm pretty certain. What option of phenix.refine makes it to list map-model CC per residue (can't remember implementing this in phenix.refine)? Pavel On 11/6/18 06:49, Boaz Shaanan wrote:

Hi,

Does phenix.refine produce real-space correlation list for nucleotides in  a protein-DNA complex, in the same way that it does for the protein? Or do I not know where to look for it?

Cheers,

         Boaz