On 01/29/2011 03:00 PM, [email protected] wrote:

Message: 1 Date: Fri, 28 Jan 2011 12:09:01 -0800 From: Nathaniel Echols To: PHENIX user mailing list Subject: Re: [phenixbb] Phenix version 1.7-650 and coot Message-ID: Content-Type: text/plain; charset=ISO-8859-1

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I just installed phenix version 1.7-650 on fedora 14 64-bit and noticed that if I start coot from within phenix interface, most of the icons on the right hand side of the coot window are not displayed. There is a lot of messages like this:

Error loading icon: Couldn't recognize the image file format for file '/usr/share/coot/pixmaps/residue-info.png'

for png and svg files in the console window. I can see all of the icons if I start coot directly. I am using coot version 1.6.2-pre1 rev 3213 which is installed on 64-bit fedora 14 as a rpm file. I did not see this issue on a phenix version 1.6.4-476 with the same version of coot. Could you please send me the complete console output from Coot under

On Fri, Jan 28, 2011 at 8:00 AM, Leonid Flaks wrote: these conditions:

a) when launching from Phenix 1.7 b) when launching from Phenix 1.6.4 c)when launching from the command line?

Very little has changed in the Coot-related parts of Phenix since 1.6.4, so I'm not sure how it's possible for one to work but not the other. In the past, errors like this were due to conflicts with the shared libraries distributed with Phenix, but we largely reset the environment when starting Coot to avoid the problem, and I'm pretty sure we started that a year and a half ago.

thanks, Nat

Nat, first of all - my apologies for the incorrect report. It turned out this problem exists in phenix 1.6.4 under fedora 14 also - just nobody noticed it on the current setup! Fedora 14 is about 2 month old and we are coming out of the winter shutdown. We had a mixture of fedora 12 and 13 before and did not see that problem. Of course, python version has been changed to python-2.7 for Fedora 14. Console output for all 3 conditions are saved. I'll mail them to you directly - I don't want to flood the list. Thanks, Leon -- Leonid Flaks Phone: (631) 344-2682 Fax : (631) 344-2741