phenix.geometry_minimization: regularize model geometry


The program idealizes model geometry according to standard geometry restraints.

In addition it can use extra restraints such as:
  • Ramachandran plot,
  • secondary structure,
  • reference to starting position,
  • C-beta deviations restraints,
  • amino-acid residue side-chain rotamer restraints,
  • other user-defined (custom) restraints.

Command line usage examples:

% phenix.geometry_minimization model.pdb


Graphical user interface is available

List of all available keywords