PHENIX data downloads
Contact: Tom Terwilliger, tterwilliger@newmexicoconsortium.org
Improving AlphaFold modeling using experimental density maps
Thomas C. Terwilliger, Billy K. Poon, Pavel V. Afonine,
Christopher J. Schlicksup, Tristan I. Croll, Claudia Millan,
Jane Richardson,
Randy J. Read, Paul D. Adams
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You can find maps and data used to generate figures at:
alphafold_with_density_2022
You can find maps and data used to generate figures at:
denmod_2020
You can find the spreadsheets used in the analyses in this paper
and all the automatically-built models and parameters used to generate them at:
map_to_model_2018
Macromolecular X-ray structure determination using weak anomalous data
Gábor Bunkóczi, Airlie J. McCoy, Nathaniel Echols, Ralf W. Grosse-Kunstleve, Paul D. Adams, Randy J. Read, Thomas C. Terwilliger
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You can find the spreadsheets used in the analyses in this paper
and the scaled, merged data used in Fig. 2 at:
sad_2014
Increasing the Radius of Convergence of Molecular Replacement by Density and Energy Guided Protein Structure Optimization
Frank DiMaio, Thomas C. Terwilliger, Randy J. Read, Alexander Wlodawer, Gustav Oberdorfer, Eugene Valkov, Assaf Alon, Deborah Fass, Herbert L. Axelrod, Debanu Das, Sergey M. Vorobiev, Hideo Iwai, P. Raj Pokkuluri & David Baker
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You can find the raw data used in the analyses in this paper at:
rosetta_2011
You can find the unique ligand set used in the analyses in this paper at:
ligand_2006
Interpretation of ensembles created by
multiple iterative rebuilding of macromolecular models. T. C. Terwilliger, R. W. Grosse-Kunstleve, P. V. Afonine, P. D. Adams, N.
W. Moriarty P. H. Zwart, R. J. Read, D. Turk and L.-W. Hung Acta Cryst.
D63, 597-610 (2007)
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[pdf] |
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You can find the models used in the analyses in this paper at:
mult_models_2006
Decision-making in structure solution using Bayesian estimates of map quality: the PHENIX AutoSol wizard.
T. C. Terwilliger, P. D. Adams, R. J. Read, A. J. McCoy, N. W. Moriarty, R. W. Grosse-Kunstleve, P. V. Afonine, P. H. Zwart and L.-W. Hung
Acta Cryst. D65, 582-601 (2009)
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[pdf]
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You can find the data and spreadsheets in the analyses in this paper at:
scoring_2009
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