[cctbxbb] Problems compiling cctbx on OS X (10.8.0)

[Richard Gildea]

Hi Bill,

What version of the cctbx sources are you using? As Luc mentioned, the
first error from your log was resolved about 2 months ago with svn revision
15462 (
http://cctbx.svn.sourceforge.net/viewvc/cctbx?view=revision&revision=15462).
If you are using the latest "released" build (about 3 months old), then you
should either update to latest nightly builds (http://cci.lbl.gov/builds/)
or track the svn. It is known that the cctbx will not fully compile using
clang with the older version of boost we currently distribute, however if
you use a recent boost release it should be fine (it is also fine using
--compiler=gcc). We are currently working on updating to the latest boost
(the problem is with compatibility with some of the older platforms we
support).

Hope that helps,

Richard

On 3 August 2012 08:53, William G. Scott <wgscott at ucsc.edu> wrote:

> Hi Luc:
>
> I don't know how to find the version of Boost, but everything else is here:
>
> http://fennario.ucsc.edu/~wgscott/temp/everything.log
>
> I've hidden all "third-party" stuff like /usr/local and /sw, so the only
> (unmodified) python is what comes with 10.8, the only compilers are those
> supplied with the latest Xcode, and so on.
>
> This time I used the supplied cctbx_install_script.csh and put a -v in the
> shell invocation to provide verbose output.
>
> I invoked this from zsh, from bash, and from tcsh.  Only the first of
> these has significant customizations, so I don't think it is my shell
> environment.
>
> I can't think of anything else.  Since g++ works, I can't see how it could
> be anything other than clang.
>
>
>
> Bill
>
>
> William G. Scott
> Professor
> Department of Chemistry and Biochemistry
> and The Center for the Molecular Biology of RNA
> 228 Sinsheimer Laboratories
> University of California at Santa Cruz
> Santa Cruz, California 95064
> USA
>
>
>
> On Aug 2, 2012, at 5:26 AM, Luc Bourhis <luc_j_bourhis at mac.com> wrote:
>
> > Hi William,
> >
> >> I am having the same problem compiling cctbx stand-alone, or within
> CCP4.  I've posted the error log here:
> >>
> >> http://fennario.ucsc.edu/~wgscott/temp/cctbx_compile_errors.log
> >
> > From the information given in the discussion that followed, you have
> installed Xcode 4.4 command line tools. So do I but I can't reproduce the
> problem with the cctbx trunk as of a few minutes ago. From the error log
> you linked to, the compilation of mmtbx/bulk_solvent/bulk_solvent_ext.cpp
> fails. Could you copy me the exact compiler invocation? Moreover, although
> it should not matter considering the compiler errors at hand, could you
> tell me which version of Boost you used?
> >
> > Finally, a general remark is in order: thou shall never try to work
> around such problems by playing with --compiler. Instead, please, loudly
> complain on this forum: the cctbx must compile with the latest Xcode tools
> and a build directory setup with simply "python configure.py mmtbx".
> >
> > Best wishes,
> >
> > Luc
> >
> > _______________________________________________
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>
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