[cctbxbb] Build on OS X Lion
Ralf Grosse-Kunstleve
rwgrosse-kunstleve at lbl.gov
Wed Feb 22 01:29:20 PST 2012
Hi Graeme,
Could you try with
.../libtbx/configure.py --compiler=gcc ...
and if that also doesn't work --compiler=gcc-4.2
?
Ralf
On Wed, Feb 22, 2012 at 12:56 AM, <Graeme.Winter at diamond.ac.uk> wrote:
> Hi Ralf,
>
> Thanks for getting back so fast - I get these:
>
> Graemes-MacBook-Pro:build graeme$ c++ --version
> Apple clang version 3.1 (tags/Apple/clang-318.0.45) (based on LLVM 3.1svn)
> Target: x86_64-apple-darwin11.3.0
> Thread model: posix
>
> Graemes-MacBook-Pro:build graeme$ cat
> /Users/graeme/svn/cctbx/sources/boost/TAG
> 73458
>
> Additionally
>
> Graemes-MacBook-Pro:build graeme$ which c++
> /usr/bin/c++
>
> Graemes-MacBook-Pro:build graeme$ g++ --version
> i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build
> 5658) (LLVM build 2336.9.00)
> Copyright (C) 2007 Free Software Foundation, Inc.
> This is free software; see the source for copying conditions. There is NO
> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
>
> X-code from app store last night...
>
> Best wishes,
>
> Graeme
>
>
> ________________________________
> From: cctbxbb-bounces at phenix-online.org [cctbxbb-bounces at phenix-online.org]
> on behalf of Ralf Grosse-Kunstleve [rwgrosse-kunstleve at lbl.gov]
> Sent: 22 February 2012 08:51
> To: cctbx mailing list
> Subject: Re: [cctbxbb] Build on OS X Lion
>
> Hi Graeme,
>
> What do you get from
>
> c++ --version
>
> ?
> On my Lion laptop I get
>
> i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build
> 5658) (LLVM build 2335.15.00)
>
> Also, what do you get from
>
> cat /Users/graeme/svn/cctbx/sources/boost/TAG
>
> ?
>
> Ralf
>
> On Wed, Feb 22, 2012 at 12:28 AM, <Graeme.Winter at diamond.ac.uk<mailto:
> Graeme.Winter at diamond.ac.uk>> wrote:
> Hi Folks,
>
> Just ran the cctbx_svn_getting_started script to do a build on a new lion
> system and I got this error - had anyone else got this working correctly on
> such a system? Template definition not found is a little beyond my usual
> C++ debugging skills.
>
> Many thanks,
>
> Graeme
>
>
>
>
> c++ -o scitbx/math/boost_python/tensor_rank_2.o -c -DBOOST_ALL_NO_LIB
> -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2
> -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w
> -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude
> -I/Users/graeme/svn/cctbx/sources/include
> -I/Users/graeme/svn/cctbx/sources/cctbx_project/include
> -I/Users/graeme/svn/cctbx/sources/cctbx_project
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/tensor_rank_2.cpp
> clang: warning: argument unused during compilation: '-no-cpp-precomp'
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9:
> In file included from
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:339:16:
> error:
> call to function 'bessel_j_small_z_series' that is neither visible in
> the
> template definition nor found by argument-dependent lookup
> Jv = bessel_j_small_z_series(v, x, pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:119:4:
> note:
> in instantiation of function template specialization
> 'boost::math::detail::bessel_jy<long double,
> boost::math::policies::policy<boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy> >' requested here
> bessel_jy(v, x, &j, &y, need_j, pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:165:9:
> note:
> in instantiation of function template specialization
> 'boost::math::detail::cyl_bessel_j_imp<long double,
> boost::math::policies::policy<boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy> >' requested here
> * cyl_bessel_j_imp(T(T(n)+T(0.5f)), x, bessel_no_int_tag(), pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:449:65:
> note:
> in instantiation of function template specialization
> 'boost::math::detail::sph_bessel_j_imp<long double,
> boost::math::policies::policy<boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy> >' requested here
> return policies::checked_narrowing_cast<result_type, Policy>(detail:...
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:455:11:
> note:
> in instantiation of function template specialization
> 'boost::math::sph_bessel<double,
> boost::math::policies::policy<boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy,
> boost::math::policies::default_policy> >' requested here
> return sph_bessel(v, x, policies::policy<>());
> ^
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:291:13:
> note:
> in instantiation of function template specialization
> 'boost::math::sph_bessel<double>' requested here
> return( sph_bessel(l,x) );
> ^
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:363:9:
> note:
> in instantiation of function template specialization
> 'scitbx::math::bessel::spherical_bessel<double>' requested here
> bessel::spherical_bessel);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10:
> note:
> 'bessel_j_small_z_series' should be declared prior to the call site or
> in
> namespace 'boost::math::policies'
> inline T bessel_j_small_z_series(T v, T x, const Policy& pol)
> ^
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9:
> In file included from
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:346:16:
> error:
> call to function 'bessel_y_small_z_series' that is neither visible in
> the
> template definition nor found by argument-dependent lookup
> Yv = bessel_y_small_z_series(v, x, &Yv_scale, pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:139:10:
> note:
> 'bessel_y_small_z_series' should be declared prior to the call site or
> in
> namespace 'boost::math::policies'
> inline T bessel_y_small_z_series(T v, T x, T* pscale, const Policy& pol)
> ^
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9:
> In file included from
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:356:16:
> error:
> call to function 'bessel_j_small_z_series' that is neither visible in
> the
> template definition nor found by argument-dependent lookup
> Jv = bessel_j_small_z_series(v, x, pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:47:10:
> note:
> 'bessel_j_small_z_series' should be declared prior to the call site or
> in
> namespace 'boost::math::policies'
> inline T bessel_j_small_z_series(T v, T x, const Policy& pol)
> ^
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/math_ext.cpp:3:
> In file included from
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/bessel.h:9:
> In file included from
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/bessel.hpp:17:
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy.hpp:363:16:
> error:
> call to function 'bessel_yn_small_z' that is neither visible in the
> template definition nor found by argument-dependent lookup
> Yv = bessel_yn_small_z(n, x, &Yv_scale, pol);
> ^
> /Users/graeme/svn/cctbx/sources/boost/boost/math/special_functions/detail/bessel_jy_series.hpp:213:3:
> note:
> 'bessel_yn_small_z' should be declared prior to the call site or in
> namespace 'boost::math::policies'
> T bessel_yn_small_z(int n, T z, T* scale, const Policy& pol)
> ^
> 4 errors generated.
> c++ -o scitbx/math/boost_python/chebyshev.o -c -DBOOST_ALL_NO_LIB
> -DBOOST_DISABLE_THREADS -DBOOST_PYTHON_MAX_BASES=2
> -I/Users/graeme/svn/cctbx/sources/boost -fPIC -fno-strict-aliasing -w
> -no-cpp-precomp -DNDEBUG -O3 -ffast-math -Iinclude
> -I/Users/graeme/svn/cctbx/sources/include
> -I/Users/graeme/svn/cctbx/sources/cctbx_project/include
> -I/Users/graeme/svn/cctbx/sources/cctbx_project
> -I/System/Library/Frameworks/Python.framework/Versions/2.7/include/python2.7
> /Users/graeme/svn/cctbx/sources/cctbx_project/scitbx/math/boost_python/chebyshev.cpp
> clang: warning: argument unused during compilation: '-no-cpp-precomp'
> scons: *** [scitbx/math/boost_python/math_ext.o] Error 1
> scons: building terminated because of errors.
> usr+sys time: 23.10 seconds
> wall clock time: 3 minutes 39.02 seconds (219.02 seconds total)
>
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> use, copy, retain, distribute or disclose the information in or attached to
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> Any opinions expressed within this e-mail are those of the individual and
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> Diamond Light Source Ltd. cannot guarantee that this e-mail or any
> attachments are free from viruses and we cannot accept liability for any
> damage which you may sustain as a result of software viruses which may be
> transmitted in or with the message.
> Diamond Light Source Limited (company no. 4375679). Registered in England
> and Wales with its registered office at Diamond House, Harwell Science and
> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
>
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