[cctbxbb] Invert hand of shelxd res file from cctbx

Oleg Dolomanov oleg at olexsys.org
Wed May 30 05:11:27 PDT 2012


Hi Graeme,
I am not sure where you got stuck, but this will work for you:
##############################from cctbx import xrayf = xray.structure.from_shelx(filename="e:/graeme.ins")out = open("e:/gareme.pdb", "w+")print >> out, f.change_hand().as_pdb_file(fractional_coordinates=True)out.close()#####################################
Cheers,
OlegFrom: Graeme.Winter at diamond.ac.uk
To: cctbxbb at phenix-online.org
Date: Wed, 30 May 2012 10:18:29 +0000
Subject: [cctbxbb] Invert hand of shelxd res file from cctbx









Hi Folks,
 
This should be easy but I can’t find anything!
 
I have a .res file:
 
[gw56 at ws050 fast_ep]$ cat sad_fa.res
REM Best SHELXD solution:   CC 41.11   CC(weak) 23.51   CFOM  64.62
REM
TITL sad_fa.ins SAD in P422
CELL  0.98000   78.17   78.17   37.87   90.00   90.00   90.00
LATT  -1
SYMM -Y+1/2,X+1/2,Z+1/4
SYMM -X,-Y,Z+1/2
SYMM Y+1/2,-X+1/2,Z+3/4
SYMM X+1/2,-Y+1/2,-Z+3/4
SYMM Y,X,-Z
SYMM -X+1/2,Y+1/2,-Z+1/4
SYMM -Y,-X,-Z+1/2
SFAC SE
UNIT   256
SE01   1  0.600227  0.892868  0.042187   1.0000  0.2
SE02   1  0.627518  0.852661  0.427392   0.8667  0.2
SE03   1  0.867409  0.911667  0.394418   0.8420  0.2
SE04   1  0.489761  0.805634  0.391009   0.7279  0.2
SE05   1  0.642792  0.649048  0.369694   0.7172  0.2
SE06   1  0.678879  0.535027  0.477918   0.4571  0.2
SE07   1  0.609207  0.572754  0.421746   0.4212  0.2
SE08   1  0.584526  0.536499  0.322047   0.4154  0.2
SE09   1  0.843063  0.846794  0.480296   0.3831  0.2
SE10   1  0.622429  0.743332  0.157899   0.3604  0.2
SE11   1  0.626114  0.528595  0.644789   0.3590  0.2
HKLF 3
END
 
which I would like to read, invert the hand of and write as a pdb file. I got stuck trying to work through the example / test code. Can someone point me in the right direction?
 
Thanks,
 
Graeme



 

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