[cctbxbb] build problem on ubuntu 12.04

Sun Jun 9 18:04:09 PDT 2013

Hello, is the current cctbx build (2013_02_27_0005) known to be 
buildable on Ubuntu ? I tried "perl cctbx_bundle.selfx" without success. 
After some poking about I found an exception raised in the 
platform.architecture() call in env_config.py/is_64bit_architecture(). 
Modifying the function to simply  return False allowed the build to 
complete (log attached).This is on 12.04 with stock python 2.7.3 and the 
"platform.architecture()" call works as expected in a simple test.
thanks,
Alastair
-------------- next part --------------
Build tag:
2013_02_27_0005
Please enter the number of available CPUs [1]: Number of available CPUs: 4
Python 2.7.3

Precompiling all .py files. This may take a minute or two.

Configuring cctbx build directory
Python: 2.7.3 "/usr/bin/python"
Compiler: default
Build mode: release
Warning level: 0
Precompiled Headers: False
Static libraries: False
Static exe: False
Scan Boost headers: False
Write full flex_fwd.h files: False
Build Boost.Python extensions: True
Define BOOST_PYTHON_NO_PY_SIGNATURES: False
Define BOOST_PYTHON_BOOL_INT_STRICT: True
Enable OpenMP if possible: False
Enable CUDA: False
Use opt_resources if available: False
Use environment flags: False
command_version_suffix: None
Relocatable paths anchored at: /home/afyfe/cctbx/cctbx_build
Top-down list of all modules involved:
  fftw3tbx         "/home/afyfe/cctbx/cctbx_sources/fftw3tbx"
  rstbx            "/home/afyfe/cctbx/cctbx_sources/rstbx"
  spotfinder       "/home/afyfe/cctbx/cctbx_sources/spotfinder"
  annlib+adaptbx   "/home/afyfe/cctbx/cctbx_sources/annlib"
                   "/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx"
  smtbx            "/home/afyfe/cctbx/cctbx_sources/smtbx"
  mmtbx            "/home/afyfe/cctbx/cctbx_sources/mmtbx"
  iotbx            "/home/afyfe/cctbx/cctbx_sources/iotbx"
  ccp4io+adaptbx   "/home/afyfe/cctbx/cctbx_sources/ccp4io"
                   "/home/afyfe/cctbx/cctbx_sources/ccp4io_adaptbx"
  ucif             "/home/afyfe/cctbx/cctbx_sources/ucif"
  cbflib+adaptbx   "/home/afyfe/cctbx/cctbx_sources/cbflib"
                   "/home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx"
  clipper+adaptbx  "/home/afyfe/cctbx/cctbx_sources/clipper"
                   "/home/afyfe/cctbx/cctbx_sources/clipper_adaptbx"
  cctbx            "/home/afyfe/cctbx/cctbx_sources/cctbx"
  scitbx           "/home/afyfe/cctbx/cctbx_sources/scitbx"
  fable            "/home/afyfe/cctbx/cctbx_sources/fable"
  omptbx           "/home/afyfe/cctbx/cctbx_sources/omptbx"
  boost+adaptbx    "/home/afyfe/cctbx/cctbx_sources/boost"
                   "/home/afyfe/cctbx/cctbx_sources/boost_adaptbx"
  tbxx             "/home/afyfe/cctbx/cctbx_sources/tbxx"
  chiltbx          "/home/afyfe/cctbx/cctbx_sources/chiltbx"
  libtbx           "/home/afyfe/cctbx/cctbx_sources/libtbx"
Creating files in build directory: "/home/afyfe/cctbx/cctbx_build"
    dispatcher_include_template.sh
    dispatcher_head.sh
    setpaths.sh
    setpaths.csh
    setpaths_all.sh
    setpaths_all.csh
    setpaths_debug.sh
    unsetpaths.sh
    setpaths_debug.csh
    unsetpaths.csh
    SConstruct
    Makefile
    run_tests.csh
Processing: "/home/afyfe/cctbx/cctbx_sources/libtbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/boost_adaptbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/fable/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/scitbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/cctbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/iotbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/mmtbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/smtbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/spotfinder/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/rstbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/fftw3tbx/command_line"
Processing: "/home/afyfe/cctbx/cctbx_sources/boost_adaptbx/libtbx_refresh.py"
Processing: "/home/afyfe/cctbx/cctbx_sources/scitbx/libtbx_refresh.py"
  Generating C++ header files in:
    "/home/afyfe/cctbx/cctbx_build/include/scitbx/array_family"
  Generating C++ files in:
    "/home/afyfe/cctbx/cctbx_build/include/scitbx/array_family/boost_python"
  Using fable to convert scitbx/lbfgs.f
Processing: "/home/afyfe/cctbx/cctbx_sources/cctbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/afyfe/cctbx/cctbx_build/cctbx/eltbx"
  Generating C++ files in:
    "/home/afyfe/cctbx/cctbx_build/include/cctbx/boost_python"
Processing: "/home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/libtbx_refresh.py"
  Copying to lib: "/home/afyfe/cctbx/cctbx_sources/cbflib/pycbf/pycbf.py"
Processing: "/home/afyfe/cctbx/cctbx_sources/iotbx/libtbx_refresh.py"
  Using fable to convert iotbx/pdb/hybrid_36_f.f
    Writing: iotbx/pdb/hybrid_36_fem.cpp
Processing: "/home/afyfe/cctbx/cctbx_sources/mmtbx/libtbx_refresh.py"
Processing: "/home/afyfe/cctbx/cctbx_sources/smtbx/libtbx_refresh.py"
  Generating C++ files in:
    "/home/afyfe/cctbx/cctbx_build/include/smtbx/boost_python"
Processing: "/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/libtbx_refresh.py"
  Generating C++ files for self-inclusive approximate nearest neighbor
Processing: "/home/afyfe/cctbx/cctbx_sources/fftw3tbx/libtbx_refresh.py"
Done.

Installing cctbx modules. This may take a while.
scons: Reading SConscript files ...
libtbx.scons: OpenMP is disabled.
BOOST_VERSION: 105400
libtbx.scons: implicit dependency scan disabled for directory /home/afyfe/cctbx/cctbx_sources/boost
fftw3tbx: fftw3.h not available.
fftw3tbx: Compilation skipped.
scons: done reading SConscript files.
scons: Building targets ...
g++ -o annlib/src/ANN.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/ANN.cpp
g++ -o annlib/src/bd_fix_rad_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/bd_fix_rad_search.cpp
g++ -o annlib/src/bd_pr_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/bd_pr_search.cpp
g++ -o annlib/src/bd_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/bd_search.cpp
g++ -o annlib/src/bd_tree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/bd_tree.cpp
g++ -o annlib/src/brute.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/brute.cpp
g++ -o annlib/src/kd_dump.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_dump.cpp
g++ -o annlib/src/kd_fix_rad_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_fix_rad_search.cpp
g++ -o annlib/src/kd_pr_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_pr_search.cpp
g++ -o annlib/src/kd_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_search.cpp
g++ -o annlib/src/kd_split.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_split.cpp
g++ -o annlib/src/kd_tree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_tree.cpp
g++ -o annlib/src/kd_util.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/kd_util.cpp
g++ -o annlib/src/perf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib/src/perf.cpp
g++ -o annlib_adaptbx/ann/ann_adaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/ann/ann_adaptor.cpp
g++ -o annlib_adaptbx/ann/boost_python/annlib_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/ann/boost_python/annlib_ext.cpp
g++ -o annlib_adaptbx/self_include/ANN.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/ANN.cpp
g++ -o annlib_adaptbx/self_include/bd_fix_rad_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_fix_rad_search.cpp
g++ -o annlib_adaptbx/self_include/bd_pr_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_pr_search.cpp
g++ -o annlib_adaptbx/self_include/bd_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_search.cpp
g++ -o annlib_adaptbx/self_include/bd_tree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_tree.cpp
g++ -o annlib_adaptbx/self_include/brute.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/brute.cpp
g++ -o annlib_adaptbx/self_include/kd_dump.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_dump.cpp
g++ -o annlib_adaptbx/self_include/kd_fix_rad_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_fix_rad_search.cpp
g++ -o annlib_adaptbx/self_include/kd_pr_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_pr_search.cpp
g++ -o annlib_adaptbx/self_include/kd_search.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_search.cpp
g++ -o annlib_adaptbx/self_include/kd_split.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_split.cpp
g++ -o annlib_adaptbx/self_include/kd_tree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_tree.cpp
g++ -o annlib_adaptbx/self_include/kd_util.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/kd_util.cpp
g++ -o annlib_adaptbx/self_include/perf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include annlib_adaptbx/self_include/perf.cpp
g++ -o boost/libs/python/src/converter/arg_to_python_base.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/converter/arg_to_python_base.cpp
g++ -o boost/libs/python/src/converter/builtin_converters.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/converter/builtin_converters.cpp
g++ -o boost/libs/python/src/converter/from_python.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/converter/from_python.cpp
g++ -o boost/libs/python/src/converter/registry.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/converter/registry.cpp
g++ -o boost/libs/python/src/converter/type_id.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/converter/type_id.cpp
g++ -o boost/libs/python/src/dict.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/dict.cpp
g++ -o boost/libs/python/src/errors.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/errors.cpp
g++ -o boost/libs/python/src/exec.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/exec.cpp
g++ -o boost/libs/python/src/import.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/import.cpp
g++ -o boost/libs/python/src/list.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/list.cpp
g++ -o boost/libs/python/src/long.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/long.cpp
g++ -o boost/libs/python/src/module.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/module.cpp
g++ -o boost/libs/python/src/numeric.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/numeric.cpp
g++ -o boost/libs/python/src/object/class.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/class.cpp
g++ -o boost/libs/python/src/object/enum.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/enum.cpp
g++ -o boost/libs/python/src/object/function.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/function.cpp
g++ -o boost/libs/python/src/object/function_doc_signature.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/function_doc_signature.cpp
g++ -o boost/libs/python/src/object/inheritance.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/inheritance.cpp
g++ -o boost/libs/python/src/object/iterator.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/iterator.cpp
g++ -o boost/libs/python/src/object/life_support.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/life_support.cpp
g++ -o boost/libs/python/src/object/pickle_support.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/pickle_support.cpp
g++ -o boost/libs/python/src/object/stl_iterator.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object/stl_iterator.cpp
g++ -o boost/libs/python/src/object_operators.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object_operators.cpp
g++ -o boost/libs/python/src/object_protocol.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/object_protocol.cpp
g++ -o boost/libs/python/src/slice.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/slice.cpp
g++ -o boost/libs/python/src/str.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/str.cpp
g++ -o boost/libs/python/src/tuple.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/tuple.cpp
g++ -o boost/libs/python/src/wrapper.o -c -DBOOST_PYTHON_MAX_BASES=2 -DBOOST_PYTHON_SOURCE -DBOOST_PYTHON_BOOL_INT_STRICT -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost/libs/python/src/wrapper.cpp
g++ -o boost_adaptbx/hybrid_times_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/hybrid_times_ext.cpp
g++ -o boost_adaptbx/meta_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/meta_ext.cpp
g++ -o boost_adaptbx/optional_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/optional_ext.cpp
g++ -o boost_adaptbx/rational_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/rational_ext.cpp
g++ -o boost_adaptbx/std_pair_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/std_pair_ext.cpp
g++ -o boost_adaptbx/tests/python_streambuf_test_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/tests/python_streambuf_test_ext.cpp
g++ -o boost_adaptbx/tests/tst_optional_copy.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/tests/tst_optional_copy.cpp
g++ -o boost_adaptbx/tests/tst_optional_copy -s boost_adaptbx/tests/tst_optional_copy.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o boost_adaptbx/tuple_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/boost_adaptbx/tuple_ext.cpp
gcc -o cbflib/examples/img.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/examples/img.c
gcc -o cbflib/pycbf/pycbf_wrap.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cbflib/pycbf/pycbf_wrap.c
gcc -o cbflib/src/cbf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf.c
gcc -o cbflib/src/cbf_alloc.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_alloc.c
gcc -o cbflib/src/cbf_ascii.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_ascii.c
gcc -o cbflib/src/cbf_binary.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_binary.c
gcc -o cbflib/src/cbf_byte_offset.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_byte_offset.c
gcc -o cbflib/src/cbf_canonical.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_canonical.c
gcc -o cbflib/src/cbf_codes.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_codes.c
gcc -o cbflib/src/cbf_compress.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_compress.c
gcc -o cbflib/src/cbf_context.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_context.c
gcc -o cbflib/src/cbf_file.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_file.c
gcc -o cbflib/src/cbf_lex.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_lex.c
gcc -o cbflib/src/cbf_packed.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_packed.c
gcc -o cbflib/src/cbf_predictor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_predictor.c
gcc -o cbflib/src/cbf_read_binary.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_read_binary.c
gcc -o cbflib/src/cbf_read_mime.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_read_mime.c
gcc -o cbflib/src/cbf_simple.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_simple.c
gcc -o cbflib/src/cbf_string.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_string.c
gcc -o cbflib/src/cbf_stx.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_stx.c
gcc -o cbflib/src/cbf_tree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_tree.c
gcc -o cbflib/src/cbf_uncompressed.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_uncompressed.c
gcc -o cbflib/src/cbf_write.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_write.c
gcc -o cbflib/src/cbf_write_binary.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_write_binary.c
gcc -o cbflib/src/cbf_ws.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/cbf_ws.c
gcc -o cbflib/src/md5c.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib/src/md5c.c
g++ -o cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/boost_python/cbflib_ext.cpp
g++ -o cbflib_adaptbx/detectors/buffer_based_service.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/buffer_based_service.cpp
g++ -o cbflib_adaptbx/detectors/cbf_adaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/cbf_adaptor.cpp
g++ -o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/cbf_byte_offset_optimized.cpp
g++ -o cbflib_adaptbx/detectors/mar_adaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/mar_adaptor.cpp
g++ -o cbflib_adaptbx/detectors/tst_memory.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/cbflib -I/home/afyfe/cctbx/cctbx_sources/cbflib/examples -I/home/afyfe/cctbx/cctbx_sources/cbflib/include /home/afyfe/cctbx/cctbx_sources/cbflib_adaptbx/detectors/tst_memory.cpp
gcc -o ccp4io/lib/libccp4/ccp4/ccp4_array.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/ccp4_array.c
gcc -o ccp4io/lib/libccp4/ccp4/ccp4_parser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/ccp4_parser.c
gcc -o ccp4io/lib/libccp4/ccp4/ccp4_unitcell.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/ccp4_unitcell.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_accessor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_accessor.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_close.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_close.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_data.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_header.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_header.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_labels.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_labels.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_open.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_open.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_skew.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_skew.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_stats.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_stats.c
gcc -o ccp4io/lib/libccp4/ccp4/cmap_symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmap_symop.c
gcc -o ccp4io/lib/libccp4/ccp4/cmtzlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cmtzlib.c
gcc -o ccp4io/lib/libccp4/ccp4/cvecmat.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/cvecmat.c
gcc -o ccp4io/lib/libccp4/ccp4/library_err.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/library_err.c
gcc -o ccp4io/lib/libccp4/ccp4/library_file.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/library_file.c
gcc -o ccp4io/lib/libccp4/ccp4/library_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4/library_utils.c
g++ -o ccp4io/lib/mmdb/mmdb/bfgs_min.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/bfgs_min.cpp
g++ -o ccp4io/lib/mmdb/mmdb/file_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/file_.cpp
g++ -o ccp4io/lib/mmdb/mmdb/hybrid_36.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/hybrid_36.cpp
g++ -o ccp4io/lib/mmdb/mmdb/linalg_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/linalg_.cpp
g++ -o ccp4io/lib/mmdb/mmdb/machine_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/machine_.cpp
g++ -o ccp4io/lib/mmdb/mmdb/math_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/math_.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mattype_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mattype_.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_align.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_align.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_atom.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_atom.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_bondmngr.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_bondmngr.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_chain.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_chain.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_cifdefs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_cifdefs.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_coormngr.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_coormngr.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_cryst.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_cryst.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_ficif.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_ficif.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_file.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_file.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_graph.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_graph.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_manager.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_manager.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_mask.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_mask.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_mmcif.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_mmcif.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_model.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_model.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_rwbrook.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_rwbrook.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_sbase.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_sbase.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_sbase0.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_sbase0.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_selmngr.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_selmngr.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_symop.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_tables.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_tables.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_title.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_title.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_uddata.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_uddata.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_utils.cpp
g++ -o ccp4io/lib/mmdb/mmdb/mmdb_xml.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/mmdb_xml.cpp
g++ -o ccp4io/lib/mmdb/mmdb/random_n.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/random_n.cpp
g++ -o ccp4io/lib/mmdb/mmdb/stream_.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb/stream_.cpp
g++ -o ccp4io/lib/ssm/ss_csia.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm/ss_csia.cpp
g++ -o ccp4io/lib/ssm/ss_graph.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm/ss_graph.cpp
g++ -o ccp4io/lib/ssm/ss_vxedge.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm/ss_vxedge.cpp
g++ -o ccp4io/lib/ssm/ssm_align.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm/ssm_align.cpp
g++ -o ccp4io/lib/ssm/ssm_superpose.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm/ssm_superpose.cpp
gcc -o ccp4io_adaptbx/ccp4_diskio_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_diskio_f.c
gcc -o ccp4io_adaptbx/ccp4_general.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_general.c
gcc -o ccp4io_adaptbx/ccp4_general_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_general_f.c
gcc -o ccp4io_adaptbx/ccp4_parser_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_parser_f.c
gcc -o ccp4io_adaptbx/ccp4_program.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_program.c
gcc -o ccp4io_adaptbx/ccp4_unitcell_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/ccp4_unitcell_f.c
gcc -o ccp4io_adaptbx/cmaplib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/cmaplib_f.c
gcc -o ccp4io_adaptbx/cmtzlib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/cmtzlib_f.c
gcc -o ccp4io_adaptbx/csymlib.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/csymlib.c
gcc -o ccp4io_adaptbx/csymlib_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/csymlib_f.c
g++ -o ccp4io_adaptbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/ssm -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/ccp4io_adaptbx/ext.cpp
gcc -o ccp4io_adaptbx/fortran_call_stubs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io_adaptbx/fortran_call_stubs.c
gcc -o ccp4io_adaptbx/library_f.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources ccp4io_adaptbx/library_f.c
gcc -o ccp4io_adaptbx/printf_wrappers.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/mmdb/mmdb -I. -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/ccp4io_adaptbx/printf_wrappers.c
g++ -o cctbx/adp_restraints/adp_restraints_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/adp_restraints_bpl.cpp
g++ -o cctbx/adp_restraints/adp_restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/adp_restraints_ext.cpp
g++ -o cctbx/adp_restraints/adp_similarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/adp_similarity_bpl.cpp
g++ -o cctbx/adp_restraints/aniso_restraints_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/aniso_restraints_bpl.cpp
g++ -o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/fixed_u_eq_adp_bpl.cpp
g++ -o cctbx/adp_restraints/isotropic_adp_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/isotropic_adp_bpl.cpp
g++ -o cctbx/adp_restraints/rigid_bond_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adp_restraints/rigid_bond_bpl.cpp
g++ -o cctbx/adptbx/boost_python/adptbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adptbx/boost_python/adptbx_ext.cpp
g++ -o cctbx/adptbx/boost_python/hirshfeld.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/adptbx/boost_python/hirshfeld.cpp
g++ -o cctbx/array_family/boost_python/flex_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/array_family/boost_python/flex_ext.cpp
g++ -o cctbx/array_family/boost_python/flex_hendrickson_lattman.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/array_family/boost_python/flex_hendrickson_lattman.cpp
g++ -o cctbx/array_family/boost_python/flex_miller_index.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/array_family/boost_python/flex_miller_index.cpp
g++ -o cctbx/array_family/boost_python/flex_xray_scatterer.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/array_family/boost_python/flex_xray_scatterer.cpp
g++ -o cctbx/boost_python/emma_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/boost_python/emma_ext.cpp
g++ -o cctbx/boost_python/orientation_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/boost_python/orientation_ext.cpp
g++ -o cctbx/boost_python/statistics_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/boost_python/statistics_ext.cpp
g++ -o cctbx/covariance/boost_python/covariance_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/covariance/boost_python/covariance_ext.cpp
g++ -o cctbx/crystal/asu_clusters_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/asu_clusters_bpl.cpp
g++ -o cctbx/crystal/close_packing_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/close_packing_bpl.cpp
g++ -o cctbx/crystal/coordination_sequences_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/coordination_sequences_bpl.cpp
g++ -o cctbx/crystal/crystal_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/crystal_ext.cpp
g++ -o cctbx/crystal/direct_space_asu_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/direct_space_asu_bpl.cpp
g++ -o cctbx/crystal/incremental_pairs_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/incremental_pairs_bpl.cpp
g++ -o cctbx/crystal/neighbors_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/neighbors_bpl.cpp
g++ -o cctbx/crystal/pair_tables_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/pair_tables_bpl.cpp
g++ -o cctbx/crystal/site_cluster_analysis_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/site_cluster_analysis_bpl.cpp
g++ -o cctbx/crystal/symmetry_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/crystal/symmetry_bpl.cpp
g++ -o cctbx/dmtbx/boost_python/dmtbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/dmtbx/boost_python/dmtbx_ext.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/dmtbx/boost_python/triplet_generator.cpp
g++ -o cctbx/dmtbx/boost_python/triplet_phase_relation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/dmtbx/boost_python/triplet_phase_relation.cpp
g++ -o cctbx/eltbx/basic.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/basic.cpp
g++ -o cctbx/eltbx/boost_python/chemical_elements_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/chemical_elements_ext.cpp
g++ -o cctbx/eltbx/boost_python/covalent_radii_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/covalent_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/fp_fdp_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/fp_fdp_ext.cpp
g++ -o cctbx/eltbx/boost_python/henke_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/henke_ext.cpp
g++ -o cctbx/eltbx/boost_python/icsd_radii_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/icsd_radii_ext.cpp
g++ -o cctbx/eltbx/boost_python/neutron_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/neutron_ext.cpp
g++ -o cctbx/eltbx/boost_python/sasaki_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/sasaki_ext.cpp
g++ -o cctbx/eltbx/boost_python/tiny_pse_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/tiny_pse_ext.cpp
g++ -o cctbx/eltbx/boost_python/wavelengths_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/wavelengths_ext.cpp
g++ -o cctbx/eltbx/boost_python/xray_scattering_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/boost_python/xray_scattering_ext.cpp
g++ -o cctbx/eltbx/covalent_radii.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/covalent_radii.cpp
g++ -o cctbx/eltbx/electron_scattering/peng1996.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/electron_scattering/peng1996.cpp
g++ -o cctbx/eltbx/fp_fdp.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/fp_fdp.cpp
g++ -o cctbx/eltbx/henke.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke.cpp
g++ -o cctbx/eltbx/henke_tables_01_12.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_01_12.cpp
g++ -o cctbx/eltbx/henke_tables_13_24.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_13_24.cpp
g++ -o cctbx/eltbx/henke_tables_25_36.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_25_36.cpp
g++ -o cctbx/eltbx/henke_tables_37_48.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_37_48.cpp
g++ -o cctbx/eltbx/henke_tables_49_60.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_49_60.cpp
g++ -o cctbx/eltbx/henke_tables_61_72.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_61_72.cpp
g++ -o cctbx/eltbx/henke_tables_73_84.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_73_84.cpp
g++ -o cctbx/eltbx/henke_tables_85_92.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/henke_tables_85_92.cpp
g++ -o cctbx/eltbx/icsd_radii.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/icsd_radii.cpp
g++ -o cctbx/eltbx/neutron.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/neutron.cpp
g++ -o cctbx/eltbx/sasaki.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki.cpp
g++ -o cctbx/eltbx/sasaki_tables_01_12.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_01_12.cpp
g++ -o cctbx/eltbx/sasaki_tables_13_24.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_13_24.cpp
g++ -o cctbx/eltbx/sasaki_tables_25_36.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_25_36.cpp
g++ -o cctbx/eltbx/sasaki_tables_37_48.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_37_48.cpp
g++ -o cctbx/eltbx/sasaki_tables_49_60.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_49_60.cpp
g++ -o cctbx/eltbx/sasaki_tables_61_72.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_61_72.cpp
g++ -o cctbx/eltbx/sasaki_tables_73_82.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources cctbx/eltbx/sasaki_tables_73_82.cpp
g++ -o cctbx/eltbx/tiny_pse.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/tiny_pse.cpp
g++ -o cctbx/eltbx/wavelengths.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/wavelengths.cpp
g++ -o cctbx/eltbx/xray_scattering/it1992.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/xray_scattering/it1992.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian.cpp
g++ -o cctbx/eltbx/xray_scattering/n_gaussian_raw.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/xray_scattering/n_gaussian_raw.cpp
g++ -o cctbx/eltbx/xray_scattering/wk1995.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/eltbx/xray_scattering/wk1995.cpp
g++ -o cctbx/examples/convert_ccp4_symop_lib.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/convert_ccp4_symop_lib.cpp
g++ -o cctbx/examples/find_distances.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/find_distances.cpp
g++ -o cctbx/examples/getting_started.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/getting_started.cpp
g++ -o cctbx/examples/lattice_symmetry.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/lattice_symmetry.cpp
g++ -o cctbx/examples/sym_equiv_sites.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/sym_equiv_sites.cpp
g++ -o cctbx/examples/sys_abs_equiv_space_groups.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Icctbx/examples -I/home/afyfe/cctbx/cctbx_sources/cctbx/examples /home/afyfe/cctbx/cctbx_sources/cctbx/examples/sys_abs_equiv_space_groups.cpp
g++ -o cctbx/geometry/boost_python/geometry_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry/boost_python/geometry_ext.cpp
g++ -o cctbx/geometry_restraints/angle_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/angle_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/bond_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_similarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/bond_similarity_bpl.cpp
g++ -o cctbx/geometry_restraints/bond_sorted_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/bond_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/chirality_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/chirality_bpl.cpp
g++ -o cctbx/geometry_restraints/dihedral_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/dihedral_bpl.cpp
g++ -o cctbx/geometry_restraints/geometry_restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/geometry_restraints_ext.cpp
g++ -o cctbx/geometry_restraints/motif_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/motif_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/nonbonded_bpl.cpp
g++ -o cctbx/geometry_restraints/nonbonded_sorted_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/nonbonded_sorted_bpl.cpp
g++ -o cctbx/geometry_restraints/planarity_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/geometry_restraints/planarity_bpl.cpp
g++ -o cctbx/maptbx/boost_python/basic_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/basic_map.cpp
g++ -o cctbx/maptbx/boost_python/coordinate_transformers.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/coordinate_transformers.cpp
g++ -o cctbx/maptbx/boost_python/grid_indices_around_sites.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/grid_indices_around_sites.cpp
g++ -o cctbx/maptbx/boost_python/grid_tags.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/grid_tags.cpp
g++ -o cctbx/maptbx/boost_python/gridding.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/gridding.cpp
g++ -o cctbx/maptbx/boost_python/mapper.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/mapper.cpp
g++ -o cctbx/maptbx/boost_python/maptbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/maptbx_ext.cpp
g++ -o cctbx/maptbx/boost_python/misc.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/misc.cpp
g++ -o cctbx/maptbx/boost_python/peak_search.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/peak_search.cpp
g++ -o cctbx/maptbx/boost_python/pymol_interface.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/pymol_interface.cpp
g++ -o cctbx/maptbx/boost_python/real_space_refinement.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/real_space_refinement.cpp
g++ -o cctbx/maptbx/boost_python/statistics.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/statistics.cpp
g++ -o cctbx/maptbx/boost_python/structure_factors.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/maptbx/boost_python/structure_factors.cpp
g++ -o cctbx/masks/boost_python/masks_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/masks/boost_python/masks_ext.cpp
g++ -o cctbx/math/boost_python/math_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/math/boost_python/math_ext.cpp
g++ -o cctbx/math/time_trigonometry.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/math/time_trigonometry.cpp
g++ -o cctbx/miller/asu.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/asu.cpp
g++ -o cctbx/miller/bins.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/bins.cpp
g++ -o cctbx/miller/index_generator.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/index_generator.cpp
g++ -o cctbx/miller/index_span.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/index_span.cpp
g++ -o cctbx/miller/match_bijvoet_mates.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/match_bijvoet_mates.cpp
g++ -o cctbx/miller/match_indices.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/match_indices.cpp
g++ -o cctbx/miller/match_multi_indices.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/match_multi_indices.cpp
g++ -o cctbx/miller/sym_equiv.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/miller/sym_equiv.cpp
g++ -o cctbx/sgtbx/bricks.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/bricks.cpp
g++ -o cctbx/sgtbx/change_of_basis_op.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/change_of_basis_op.cpp
g++ -o cctbx/sgtbx/find_affine.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/find_affine.cpp
g++ -o cctbx/sgtbx/group_codes.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/group_codes.cpp
g++ -o cctbx/sgtbx/hall_in.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/hall_in.cpp
g++ -o cctbx/sgtbx/lattice_tr.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/lattice_tr.cpp
g++ -o cctbx/sgtbx/lattice_symmetry.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/miller.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/miller.cpp
g++ -o cctbx/sgtbx/reciprocal_space_asu.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/reciprocal_space_ref_asu.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reciprocal_space_ref_asu.cpp
g++ -o cctbx/sgtbx/rot_mx.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/rot_mx.cpp
g++ -o cctbx/sgtbx/rot_mx_info.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/rot_mx_info.cpp
g++ -o cctbx/sgtbx/row_echelon_solve.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/row_echelon_solve.cpp
g++ -o cctbx/sgtbx/rt_mx.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/rt_mx.cpp
g++ -o cctbx/sgtbx/select_generators.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/select_generators.cpp
g++ -o cctbx/sgtbx/seminvariant.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/seminvariant.cpp
g++ -o cctbx/sgtbx/site_symmetry.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/site_symmetry.cpp
g++ -o cctbx/sgtbx/space_group.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/space_group.cpp
g++ -o cctbx/sgtbx/space_group_type.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/space_group_type.cpp
g++ -o cctbx/sgtbx/symbols.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/symbols.cpp
g++ -o cctbx/sgtbx/tensor_rank_2.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/tr_group.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/tr_group.cpp
g++ -o cctbx/sgtbx/tr_vec.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/tr_vec.cpp
g++ -o cctbx/sgtbx/utils.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/utils.cpp
g++ -o cctbx/sgtbx/wyckoff.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/wyckoff.cpp
g++ -o cctbx/sgtbx/reference_settings/hall_symbol_table.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reference_settings/hall_symbol_table.cpp
g++ -o cctbx/sgtbx/reference_settings/matrix_group_code_table.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reference_settings/matrix_group_code_table.cpp
g++ -o cctbx/sgtbx/reference_settings/normalizer.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reference_settings/normalizer.cpp
g++ -o cctbx/sgtbx/reference_settings/wyckoff.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/reference_settings/wyckoff.cpp
g++ -o cctbx/uctbx/uctbx.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/uctbx/uctbx.cpp
g++ -o cctbx/uctbx/spoil_optimization.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/uctbx/spoil_optimization.cpp
g++ -o cctbx/uctbx/crystal_orientation.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/uctbx/crystal_orientation.cpp
g++ -o cctbx/miller/boost_python/amplitude_normalisation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/amplitude_normalisation.cpp
g++ -o cctbx/miller/boost_python/asu.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/asu.cpp
g++ -o cctbx/miller/boost_python/bins.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/bins.cpp
g++ -o lib/libcctbx.so -shared -s cctbx/eltbx/basic.o cctbx/eltbx/xray_scattering/it1992.o cctbx/eltbx/xray_scattering/wk1995.o cctbx/eltbx/xray_scattering/n_gaussian_raw.o cctbx/eltbx/xray_scattering/n_gaussian.o cctbx/eltbx/fp_fdp.o cctbx/eltbx/henke.o cctbx/eltbx/henke_tables_01_12.o cctbx/eltbx/henke_tables_13_24.o cctbx/eltbx/henke_tables_25_36.o cctbx/eltbx/henke_tables_37_48.o cctbx/eltbx/henke_tables_49_60.o cctbx/eltbx/henke_tables_61_72.o cctbx/eltbx/henke_tables_73_84.o cctbx/eltbx/henke_tables_85_92.o cctbx/eltbx/icsd_radii.o cctbx/eltbx/covalent_radii.o cctbx/eltbx/neutron.o cctbx/eltbx/sasaki.o cctbx/eltbx/sasaki_tables_01_12.o cctbx/eltbx/sasaki_tables_13_24.o cctbx/eltbx/sasaki_tables_25_36.o cctbx/eltbx/sasaki_tables_37_48.o cctbx/eltbx/sasaki_tables_49_60.o cctbx/eltbx/sasaki_tables_61_72.o cctbx/eltbx/sasaki_tables_73_82.o cctbx/eltbx/tiny_pse.o cctbx/eltbx/wavelengths.o cctbx/eltbx/electron_scattering/peng1996.o cctbx/miller/asu.o cctbx/miller/bins.o cctbx/miller/index_generator.o cctbx/miller/index_span.o cctbx/miller/match_bijvoet_mates.o cctbx/miller/match_indices.o cctbx/miller/match_multi_indices.o cctbx/miller/sym_equiv.o cctbx/sgtbx/bricks.o cctbx/sgtbx/change_of_basis_op.o cctbx/sgtbx/find_affine.o cctbx/sgtbx/group_codes.o cctbx/sgtbx/hall_in.o cctbx/sgtbx/lattice_tr.o cctbx/sgtbx/lattice_symmetry.o cctbx/sgtbx/miller.o cctbx/sgtbx/reciprocal_space_asu.o cctbx/sgtbx/reciprocal_space_ref_asu.o cctbx/sgtbx/rot_mx.o cctbx/sgtbx/rot_mx_info.o cctbx/sgtbx/row_echelon_solve.o cctbx/sgtbx/rt_mx.o cctbx/sgtbx/select_generators.o cctbx/sgtbx/seminvariant.o cctbx/sgtbx/site_symmetry.o cctbx/sgtbx/space_group.o cctbx/sgtbx/space_group_type.o cctbx/sgtbx/symbols.o cctbx/sgtbx/tensor_rank_2.o cctbx/sgtbx/tr_group.o cctbx/sgtbx/tr_vec.o cctbx/sgtbx/utils.o cctbx/sgtbx/wyckoff.o cctbx/sgtbx/reference_settings/hall_symbol_table.o cctbx/sgtbx/reference_settings/matrix_group_code_table.o cctbx/sgtbx/reference_settings/normalizer.o cctbx/sgtbx/reference_settings/wyckoff.o cctbx/uctbx/uctbx.o cctbx/uctbx/spoil_optimization.o cctbx/uctbx/crystal_orientation.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o cctbx/math/time_trigonometry -s cctbx/math/time_trigonometry.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lm
g++ -o cctbx/miller/boost_python/change_basis.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/change_basis.cpp
g++ -o cctbx/miller/boost_python/expand_to_p1.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/expand_to_p1.cpp
g++ -o cctbx/miller/boost_python/f_calc_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/f_calc_map.cpp
g++ -o cctbx/miller/boost_python/index_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/index_generator.cpp
g++ -o cctbx/miller/boost_python/index_span.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/index_span.cpp
g++ -o cctbx/miller/boost_python/lookup_utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/lookup_utils.cpp
g++ -o cctbx/miller/boost_python/match_bijvoet_mates.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/match_bijvoet_mates.cpp
g++ -o cctbx/miller/boost_python/match_indices.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/match_indices.cpp
g++ -o cctbx/miller/boost_python/match_multi_indices.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/match_multi_indices.cpp
g++ -o cctbx/miller/boost_python/merge_equivalents.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/merge_equivalents.cpp
g++ -o cctbx/miller/boost_python/miller_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/miller_ext.cpp
g++ -o cctbx/miller/boost_python/phase_integrator.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/phase_integrator.cpp
g++ -o cctbx/miller/boost_python/phase_transfer.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/phase_transfer.cpp
g++ -o cctbx/miller/boost_python/randomize_amplitude_and_phase.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/randomize_amplitude_and_phase.cpp
g++ -o cctbx/miller/boost_python/slices.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/slices.cpp
g++ -o cctbx/miller/boost_python/sym_equiv.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/miller/boost_python/sym_equiv.cpp
g++ -o cctbx/sgtbx/boost_python/brick.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/brick.cpp
g++ -o cctbx/sgtbx/boost_python/change_of_basis.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/change_of_basis.cpp
g++ -o cctbx/sgtbx/boost_python/find_affine.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/find_affine.cpp
g++ -o cctbx/sgtbx/boost_python/lattice_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/lattice_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/phase_info.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/phase_info.cpp
g++ -o cctbx/sgtbx/boost_python/reciprocal_space_asu.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/reciprocal_space_asu.cpp
g++ -o cctbx/sgtbx/boost_python/rot_mx.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/rot_mx.cpp
g++ -o cctbx/sgtbx/boost_python/rt_mx.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/rt_mx.cpp
g++ -o cctbx/sgtbx/boost_python/search_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/search_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/select_generators.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/select_generators.cpp
g++ -o cctbx/sgtbx/boost_python/seminvariant.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/seminvariant.cpp
g++ -o cctbx/sgtbx/boost_python/sgtbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/sgtbx_ext.cpp
g++ -o cctbx/sgtbx/boost_python/site_symmetry.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/site_symmetry.cpp
g++ -o cctbx/sgtbx/boost_python/space_group.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/space_group.cpp
g++ -o cctbx/sgtbx/boost_python/space_group_type.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/space_group_type.cpp
g++ -o cctbx/sgtbx/boost_python/sym_equiv_sites.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/sym_equiv_sites.cpp
g++ -o cctbx/sgtbx/boost_python/symbols.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/symbols.cpp
g++ -o cctbx/sgtbx/boost_python/tensor_rank_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/tensor_rank_2.cpp
g++ -o cctbx/sgtbx/boost_python/tr_vec.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/tr_vec.cpp
g++ -o cctbx/sgtbx/boost_python/wyckoff.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/boost_python/wyckoff.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/asu_ext.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/cut.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/cut.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/reference_table.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/reference_table.cpp
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/cctbx/sgtbx/direct_space_asu/proto/tst_asu.cpp
g++ -o cctbx/symmetry_search/boost_python/symmetry_search_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/symmetry_search/boost_python/symmetry_search_ext.cpp
g++ -o cctbx/translation_search/boost_python/fast_nv1995.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/translation_search/boost_python/fast_nv1995.cpp
g++ -o cctbx/translation_search/boost_python/fast_terms.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/translation_search/boost_python/fast_terms.cpp
g++ -o cctbx/translation_search/boost_python/symmetry_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/translation_search/boost_python/symmetry_flags.cpp
g++ -o cctbx/translation_search/boost_python/translation_search_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/translation_search/boost_python/translation_search_ext.cpp
g++ -o cctbx/uctbx/boost_python/fast_minimum_reduction.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/uctbx/boost_python/fast_minimum_reduction.cpp
g++ -o cctbx/uctbx/boost_python/uctbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/uctbx/boost_python/uctbx_ext.cpp
g++ -o cctbx/xray/boost_python/conversions.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/conversions.cpp
g++ -o cctbx/xray/boost_python/curvatures_simple.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/curvatures_simple.cpp
g++ -o cctbx/xray/boost_python/extinction.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/extinction.cpp
g++ -o cctbx/xray/boost_python/f_model_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/f_model_bpl.cpp
g++ -o cctbx/xray/boost_python/fast_gradients.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/fast_gradients.cpp
g++ -o cctbx/xray/boost_python/gradient_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/gradient_flags.cpp
g++ -o cctbx/xray/boost_python/gradients_direct.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/gradients_direct.cpp
g++ -o cctbx/xray/boost_python/grouped_data.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/grouped_data.cpp
g++ -o cctbx/xray/boost_python/minimization.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/minimization.cpp
g++ -o cctbx/xray/boost_python/parameter_map.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/parameter_map.cpp
g++ -o cctbx/xray/boost_python/sampled_model_density.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/sampled_model_density.cpp
g++ -o cctbx/xray/boost_python/sampling_base.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/sampling_base.cpp
g++ -o cctbx/xray/boost_python/scatterer.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/scatterer.cpp
g++ -o cctbx/xray/boost_python/scatterer_flags.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/scatterer_flags.cpp
g++ -o lib/libcctbx_sgtbx_asu.so -s -shared cctbx/sgtbx/direct_space_asu/proto/cut.o cctbx/sgtbx/direct_space_asu/proto/reference_table.o cctbx/sgtbx/direct_space_asu/proto/direct_space_asu.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lm
g++ -o cctbx/sgtbx/direct_space_asu/proto/tst_asu -s cctbx/sgtbx/direct_space_asu/proto/tst_asu.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o cctbx/xray/boost_python/scattering_type_registry.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/scattering_type_registry.cpp
g++ -o cctbx/xray/boost_python/structure_factors_direct.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/structure_factors_direct.cpp
g++ -o cctbx/xray/boost_python/structure_factors_simple.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/structure_factors_simple.cpp
g++ -o cctbx/xray/boost_python/targets.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/targets.cpp
g++ -o cctbx/xray/boost_python/twin_components.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/twin_components.cpp
g++ -o cctbx/xray/boost_python/twin_targets.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/twin_targets.cpp
g++ -o cctbx/xray/boost_python/xray_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/boost_python/xray_ext.cpp
g++ -o cctbx/xray/observations/boost_python/observations.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/xray/observations/boost_python/observations.cpp
g++ -o cctbx/xray/observations/boost_python/observations_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/cctbx/xray/observations/boost_python/observations_ext.cpp
g++ -o cctbx/xray/targets/shelxl_wght_ls_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/cctbx/xray/targets/shelxl_wght_ls_bpl.cpp
g++ -o chiltbx/handle_test.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/chiltbx/handle_test.cpp
g++ -o chiltbx/handle_test -s chiltbx/handle_test.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o clipper/clipper/cctbx/clipper_cctbx.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/clipper/clipper/cctbx/clipper_cctbx.cpp
g++ -o clipper/clipper/contrib/sfweight.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/clipper/clipper/contrib/sfweight.cpp
g++ -o clipper/clipper/core/atomsf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/atomsf.cpp
g++ -o clipper/clipper/core/cell.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/cell.cpp
g++ -o clipper/clipper/core/clipper_memory.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/clipper_memory.cpp
g++ -o clipper/clipper/core/clipper_message.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/clipper_message.cpp
g++ -o clipper/clipper/core/clipper_stats.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/clipper_stats.cpp
g++ -o clipper/clipper/core/clipper_types.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/clipper_types.cpp
g++ -o clipper/clipper/core/clipper_util.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/clipper_util.cpp
g++ -o clipper/clipper/core/container.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/container.cpp
g++ -o clipper/clipper/core/container_hkl.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/container_hkl.cpp
g++ -o clipper/clipper/core/container_map.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/container_map.cpp
g++ -o clipper/clipper/core/container_types.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/container_types.cpp
g++ -o clipper/clipper/core/coords.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/coords.cpp
g++ -o clipper/clipper/core/derivs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/derivs.cpp
g++ -o clipper/clipper/core/hkl_compute.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_compute.cpp
g++ -o clipper/clipper/core/hkl_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_data.cpp
g++ -o clipper/clipper/core/hkl_datatypes.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_datatypes.cpp
g++ -o clipper/clipper/core/hkl_info.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_info.cpp
g++ -o clipper/clipper/core/hkl_lookup.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_lookup.cpp
g++ -o clipper/clipper/core/hkl_operators.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/hkl_operators.cpp
g++ -o clipper/clipper/core/map_interp.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/map_interp.cpp
g++ -o clipper/clipper/core/map_utils.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/map_utils.cpp
g++ -o clipper/clipper/core/nxmap.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/nxmap.cpp
g++ -o clipper/clipper/core/nxmap_operator.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/nxmap_operator.cpp
g++ -o clipper/clipper/core/ramachandran.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/ramachandran.cpp
g++ -o clipper/clipper/core/resol_basisfn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/resol_basisfn.cpp
g++ -o clipper/clipper/core/resol_fn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/resol_fn.cpp
g++ -o clipper/clipper/core/resol_targetfn.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/resol_targetfn.cpp
g++ -o clipper/clipper/core/rotation.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/rotation.cpp
g++ -o clipper/clipper/core/spacegroup.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/spacegroup.cpp
g++ -o clipper/clipper/core/spacegroup_data.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/spacegroup_data.cpp
g++ -o clipper/clipper/core/symop.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/symop.cpp
g++ -o clipper/clipper/core/xmap.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/clipper/core/xmap.cpp
g++ -o clipper/examples/symtest.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper/examples/symtest.cpp
g++ -o clipper_adaptbx/clipper/clipper_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/clipper_adaptbx/clipper/clipper_ext.cpp
g++ -o clipper_adaptbx/clipper/hendrickson_lattman_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/clipper_adaptbx/clipper/hendrickson_lattman_bpl.cpp
g++ -o clipper_adaptbx/clipper/sigmaa_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/clipper_adaptbx/clipper/sigmaa_bpl.cpp
g++ -o clipper_adaptbx/sanity_check.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources/clipper /home/afyfe/cctbx/cctbx_sources/clipper_adaptbx/sanity_check.cpp
ar rc lib/libcbf.a cbflib/examples/img.o cbflib/src/cbf.o cbflib/src/cbf_alloc.o cbflib/src/cbf_ascii.o cbflib/src/cbf_binary.o cbflib/src/cbf_byte_offset.o cbflib/src/cbf_canonical.o cbflib/src/cbf_codes.o cbflib/src/cbf_compress.o cbflib/src/cbf_context.o cbflib/src/cbf_file.o cbflib/src/cbf_lex.o cbflib/src/cbf_packed.o cbflib/src/cbf_predictor.o cbflib/src/cbf_read_binary.o cbflib/src/cbf_read_mime.o cbflib/src/cbf_simple.o cbflib/src/cbf_string.o cbflib/src/cbf_stx.o cbflib/src/cbf_tree.o cbflib/src/cbf_uncompressed.o cbflib/src/cbf_write.o cbflib/src/cbf_write_binary.o cbflib/src/md5c.o cbflib/src/cbf_ws.o cbflib_adaptbx/detectors/mar_adaptor.o cbflib_adaptbx/detectors/cbf_adaptor.o cbflib_adaptbx/detectors/cbf_byte_offset_optimized.o cbflib_adaptbx/detectors/buffer_based_service.o
ranlib lib/libcbf.a
g++ -o exe_dev/cctbx.convert_ccp4_symop_lib -s cctbx/examples/convert_ccp4_symop_lib.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cbflib.tst_memory -s cbflib_adaptbx/detectors/tst_memory.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcbf -lm
g++ -o exe_dev/cctbx.find_distances -s cctbx/examples/find_distances.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.getting_started -s cctbx/examples/getting_started.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.lattice_symmetry -s cctbx/examples/lattice_symmetry.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.sym_equiv_sites -s cctbx/examples/sym_equiv_sites.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o exe_dev/cctbx.sys_abs_equiv_space_groups -s cctbx/examples/sys_abs_equiv_space_groups.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lm
g++ -o lib/libclipper.so -shared -s clipper/clipper/core/atomsf.o clipper/clipper/core/cell.o clipper/clipper/core/clipper_memory.o clipper/clipper/core/clipper_message.o clipper/clipper/core/clipper_stats.o clipper/clipper/core/clipper_types.o clipper/clipper/core/clipper_util.o clipper/clipper/core/container.o clipper/clipper/core/container_hkl.o clipper/clipper/core/container_map.o clipper/clipper/core/container_types.o clipper/clipper/core/coords.o clipper/clipper/core/derivs.o clipper/clipper/core/hkl_compute.o clipper/clipper/core/hkl_data.o clipper/clipper/core/hkl_datatypes.o clipper/clipper/core/hkl_info.o clipper/clipper/core/hkl_lookup.o clipper/clipper/core/hkl_operators.o clipper/clipper/core/map_interp.o clipper/clipper/core/map_utils.o clipper/clipper/core/nxmap.o clipper/clipper/core/nxmap_operator.o clipper/clipper/core/ramachandran.o clipper/clipper/core/resol_basisfn.o clipper/clipper/core/resol_fn.o clipper/clipper/core/resol_targetfn.o clipper/clipper/core/rotation.o clipper/clipper/core/spacegroup.o clipper/clipper/core/spacegroup_data.o clipper/clipper/core/symop.o clipper/clipper/core/xmap.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o fable/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/fable -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/fable/ext.cpp
g++ -o exe_dev/clipper.sanity_check -s clipper_adaptbx/sanity_check.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lclipper -lm
g++ -o exe_dev/clipper.symtest -s clipper/examples/symtest.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lclipper -lm
g++ -o iotbx/ccp4_map/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/ccp4_map/ext.cpp
g++ -o iotbx/cif/boost_python/cif_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/iotbx/cif/boost_python/cif_ext.cpp
g++ -o iotbx/detectors/bruker.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/detectors/bruker.cpp
g++ -o iotbx/detectors/bruker_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/detectors/bruker_ext.cpp
g++ -o iotbx/detectors/detectors_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/detectors/detectors_ext.cpp
g++ -o iotbx/detectors/image_divider.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/detectors/image_divider.cpp
g++ -o iotbx/misc/boost_python/dtrek_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/misc/boost_python/dtrek_ext.cpp
g++ -o iotbx/misc/boost_python/scalepack_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/misc/boost_python/scalepack_ext.cpp
g++ -o iotbx/mtz/batch_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/batch_bpl.cpp
g++ -o iotbx/mtz/column.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/column.cpp
g++ -o iotbx/mtz/column_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/column_bpl.cpp
g++ -o iotbx/mtz/crystal.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/crystal.cpp
g++ -o iotbx/mtz/crystal_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/crystal_bpl.cpp
g++ -o iotbx/mtz/dataset.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/dataset.cpp
g++ -o iotbx/mtz/dataset_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/dataset_bpl.cpp
g++ -o iotbx/mtz/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/ext.cpp
g++ -o iotbx/mtz/object.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/object.cpp
g++ -o iotbx/mtz/object_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DMSETS=32 -DMXTALS=32 -DMCOLUMNS=128 -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/mtz/object_bpl.cpp
g++ -o iotbx/pdb/atom_selection.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/atom_selection.cpp
g++ -o iotbx/pdb/common_residue_names_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/common_residue_names_bpl.cpp
g++ -o iotbx/pdb/construct_hierarchy.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/construct_hierarchy.cpp
g++ -o iotbx/pdb/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/ext.cpp
g++ -o iotbx/pdb/hierarchy.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy.cpp
g++ -o iotbx/pdb/hierarchy_atom_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_atom_bpl.cpp
g++ -o iotbx/pdb/hierarchy_atoms.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_atoms.cpp
g++ -o iotbx/pdb/hierarchy_atoms_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_atoms_bpl.cpp
g++ -o iotbx/pdb/hierarchy_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_ext.cpp
g++ -o iotbx/pdb/hierarchy_select.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_select.cpp
g++ -o iotbx/pdb/hierarchy_write.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hierarchy_write.cpp
g++ -o iotbx/pdb/hybrid_36_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hybrid_36_bpl.cpp
gcc -o iotbx/pdb/hybrid_36_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hybrid_36_c.c
g++ -o iotbx/pdb/hybrid_36_cpp.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/hybrid_36_cpp.cpp
g++ -o iotbx/pdb/hybrid_36_fem.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/home/afyfe/cctbx/cctbx_sources/fable iotbx/pdb/hybrid_36_fem.cpp
g++ -o iotbx/pdb/input.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/input.cpp
g++ -o iotbx/pdb/hybrid_36_fem -s iotbx/pdb/hybrid_36_fem.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o iotbx/pdb/input_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/input_bpl.cpp
g++ -o iotbx/pdb/input_write.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/input_write.cpp
g++ -o iotbx/pdb/overall_counts.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/overall_counts.cpp
g++ -o iotbx/pdb/rna_dna_atom_names_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/rna_dna_atom_names_bpl.cpp
g++ -o iotbx/pdb/utils.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/utils.cpp
g++ -o iotbx/pdb/write_utils.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/write_utils.cpp
g++ -o iotbx/pdb/xray_structure_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/pdb/xray_structure_bpl.cpp
g++ -o iotbx/shelx/shelx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/iotbx/shelx/shelx_ext.cpp
g++ -o iotbx/wildcard_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/wildcard_ext.cpp
g++ -o iotbx/xplor/boost_python/xplor_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/iotbx/xplor/boost_python/xplor_ext.cpp
g++ -o lib/_pycbf.so -shared -s cbflib/pycbf/pycbf_wrap.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcbf -lm
g++ -o lib/libann.so -shared -s annlib/src/ANN.o annlib/src/bd_fix_rad_search.o annlib/src/bd_pr_search.o annlib/src/bd_search.o annlib/src/bd_tree.o annlib/src/brute.o annlib/src/kd_dump.o annlib/src/kd_fix_rad_search.o annlib/src/kd_pr_search.o annlib/src/kd_search.o annlib/src/kd_split.o annlib/src/kd_tree.o annlib/src/kd_util.o annlib/src/perf.o annlib_adaptbx/self_include/ANN.o annlib_adaptbx/self_include/bd_fix_rad_search.o annlib_adaptbx/self_include/bd_pr_search.o annlib_adaptbx/self_include/bd_search.o annlib_adaptbx/self_include/bd_tree.o annlib_adaptbx/self_include/brute.o annlib_adaptbx/self_include/kd_dump.o annlib_adaptbx/self_include/kd_fix_rad_search.o annlib_adaptbx/self_include/kd_pr_search.o annlib_adaptbx/self_include/kd_search.o annlib_adaptbx/self_include/kd_split.o annlib_adaptbx/self_include/kd_tree.o annlib_adaptbx/self_include/kd_util.o annlib_adaptbx/self_include/perf.o annlib_adaptbx/ann/ann_adaptor.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o lib/libboost_python.so -shared -s boost/libs/python/src/numeric.o boost/libs/python/src/list.o boost/libs/python/src/long.o boost/libs/python/src/dict.o boost/libs/python/src/tuple.o boost/libs/python/src/str.o boost/libs/python/src/slice.o boost/libs/python/src/converter/from_python.o boost/libs/python/src/converter/registry.o boost/libs/python/src/converter/type_id.o boost/libs/python/src/object/enum.o boost/libs/python/src/object/class.o boost/libs/python/src/object/function.o boost/libs/python/src/object/inheritance.o boost/libs/python/src/object/life_support.o boost/libs/python/src/object/pickle_support.o boost/libs/python/src/errors.o boost/libs/python/src/module.o boost/libs/python/src/converter/builtin_converters.o boost/libs/python/src/converter/arg_to_python_base.o boost/libs/python/src/object/iterator.o boost/libs/python/src/object/stl_iterator.o boost/libs/python/src/object_protocol.o boost/libs/python/src/object_operators.o boost/libs/python/src/wrapper.o boost/libs/python/src/import.o boost/libs/python/src/exec.o boost/libs/python/src/object/function_doc_signature.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o lib/annlib_ext.so -shared -s annlib_adaptbx/ann/boost_python/annlib_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lann -lboost_python -lm
g++ -o lib/boost_adaptbx_python_streambuf_test_ext.so -shared -s boost_adaptbx/tests/python_streambuf_test_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_optional_ext.so -shared -s boost_adaptbx/optional_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_python_hybrid_times_ext.so -shared -s boost_adaptbx/hybrid_times_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_python_meta_ext.so -shared -s boost_adaptbx/meta_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_rational_ext.so -shared -s boost_adaptbx/rational_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/boost_tuple_ext.so -shared -s boost_adaptbx/tuple_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/cbflib_ext.so -shared -s cbflib_adaptbx/detectors/boost_python/cbflib_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcbf -lboost_python -lm
ar rc lib/libccp4io.a ccp4io_adaptbx/csymlib.o ccp4io/lib/libccp4/ccp4/library_err.o ccp4io/lib/libccp4/ccp4/library_file.o ccp4io/lib/libccp4/ccp4/library_utils.o ccp4io/lib/libccp4/ccp4/ccp4_array.o ccp4io/lib/libccp4/ccp4/ccp4_parser.o ccp4io/lib/libccp4/ccp4/ccp4_unitcell.o ccp4io/lib/libccp4/ccp4/cvecmat.o ccp4io/lib/libccp4/ccp4/cmtzlib.o ccp4io/lib/libccp4/ccp4/cmap_accessor.o ccp4io/lib/libccp4/ccp4/cmap_close.o ccp4io/lib/libccp4/ccp4/cmap_data.o ccp4io/lib/libccp4/ccp4/cmap_header.o ccp4io/lib/libccp4/ccp4/cmap_labels.o ccp4io/lib/libccp4/ccp4/cmap_open.o ccp4io/lib/libccp4/ccp4/cmap_skew.o ccp4io/lib/libccp4/ccp4/cmap_stats.o ccp4io/lib/libccp4/ccp4/cmap_symop.o ccp4io/lib/mmdb/mmdb/bfgs_min.o ccp4io/lib/mmdb/mmdb/file_.o ccp4io/lib/mmdb/mmdb/hybrid_36.o ccp4io/lib/mmdb/mmdb/linalg_.o ccp4io/lib/mmdb/mmdb/machine_.o ccp4io/lib/mmdb/mmdb/math_.o ccp4io/lib/mmdb/mmdb/mattype_.o ccp4io/lib/mmdb/mmdb/mmdb_align.o ccp4io/lib/mmdb/mmdb/mmdb_atom.o ccp4io/lib/mmdb/mmdb/mmdb_bondmngr.o ccp4io/lib/mmdb/mmdb/mmdb_chain.o ccp4io/lib/mmdb/mmdb/mmdb_cifdefs.o ccp4io/lib/mmdb/mmdb/mmdb_coormngr.o ccp4io/lib/mmdb/mmdb/mmdb_cryst.o ccp4io/lib/mmdb/mmdb/mmdb_ficif.o ccp4io/lib/mmdb/mmdb/mmdb_file.o ccp4io/lib/mmdb/mmdb/mmdb_graph.o ccp4io/lib/mmdb/mmdb/mmdb_manager.o ccp4io/lib/mmdb/mmdb/mmdb_mask.o ccp4io/lib/mmdb/mmdb/mmdb_mmcif.o ccp4io/lib/mmdb/mmdb/mmdb_model.o ccp4io/lib/mmdb/mmdb/mmdb_rwbrook.o ccp4io/lib/mmdb/mmdb/mmdb_sbase.o ccp4io/lib/mmdb/mmdb/mmdb_sbase0.o ccp4io/lib/mmdb/mmdb/mmdb_selmngr.o ccp4io/lib/mmdb/mmdb/mmdb_symop.o ccp4io/lib/mmdb/mmdb/mmdb_tables.o ccp4io/lib/mmdb/mmdb/mmdb_title.o ccp4io/lib/mmdb/mmdb/mmdb_uddata.o ccp4io/lib/mmdb/mmdb/mmdb_utils.o ccp4io/lib/mmdb/mmdb/mmdb_xml.o ccp4io/lib/mmdb/mmdb/random_n.o ccp4io/lib/mmdb/mmdb/stream_.o ccp4io/lib/ssm/ss_csia.o ccp4io/lib/ssm/ss_graph.o ccp4io/lib/ssm/ss_vxedge.o ccp4io/lib/ssm/ssm_align.o ccp4io/lib/ssm/ssm_superpose.o ccp4io_adaptbx/fortran_call_stubs.o ccp4io_adaptbx/ccp4_diskio_f.o ccp4io_adaptbx/ccp4_general.o ccp4io_adaptbx/ccp4_general_f.o ccp4io_adaptbx/ccp4_parser_f.o ccp4io_adaptbx/ccp4_program.o ccp4io_adaptbx/ccp4_unitcell_f.o ccp4io_adaptbx/cmaplib_f.o ccp4io_adaptbx/cmtzlib_f.o ccp4io_adaptbx/csymlib_f.o ccp4io_adaptbx/library_f.o ccp4io_adaptbx/printf_wrappers.o
ranlib lib/libccp4io.a
g++ -o lib/ccp4io_adaptbx_ext.so -shared -s ccp4io_adaptbx/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lccp4io -lboost_python -lm
g++ -o scitbx/boost_python/utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/boost_python/utils.cpp
g++ -o scitbx/boost_python/slice.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/boost_python/slice.cpp
g++ -o scitbx/array_family/boost_python/utils.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/utils.cpp
g++ -o omptbx/stubs.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/omptbx/stubs.cpp
g++ -o lib/libomptbx.so -shared -s omptbx/stubs.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o lib/clipper_ext.so -shared -s clipper_adaptbx/clipper/clipper_ext.o clipper_adaptbx/clipper/hendrickson_lattman_bpl.o clipper_adaptbx/clipper/sigmaa_bpl.o clipper/clipper/contrib/sfweight.o clipper/clipper/cctbx/clipper_cctbx.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lclipper -lcctbx -lboost_python -lm
g++ -o lib/fable_ext.so -shared -s fable/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_ccp4_map_ext.so -shared -s iotbx/ccp4_map/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lccp4io -lboost_python -lm
gcc -o ucif/antlr3/src/antlr3baserecognizer.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3baserecognizer.c
gcc -o ucif/antlr3/src/antlr3basetree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3basetree.c
gcc -o ucif/antlr3/src/antlr3basetreeadaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3basetreeadaptor.c
gcc -o ucif/antlr3/src/antlr3bitset.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3bitset.c
gcc -o ucif/antlr3/src/antlr3collections.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3collections.c
gcc -o ucif/antlr3/src/antlr3commontoken.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3commontoken.c
gcc -o ucif/antlr3/src/antlr3commontree.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3commontree.c
gcc -o ucif/antlr3/src/antlr3commontreeadaptor.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3commontreeadaptor.c
gcc -o ucif/antlr3/src/antlr3commontreenodestream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3commontreenodestream.c
gcc -o ucif/antlr3/src/antlr3convertutf.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3convertutf.c
g++ -o lib/libscitbx_boost_python.so -shared -s scitbx/boost_python/utils.o scitbx/boost_python/slice.o scitbx/array_family/boost_python/utils.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python
g++ -o lib/cctbx_geometry_ext.so -shared -s cctbx/geometry/boost_python/geometry_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_math_ext.so -shared -s cctbx/math/boost_python/math_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_maptbx_ext.so -shared -s cctbx/maptbx/boost_python/maptbx_ext.o cctbx/maptbx/boost_python/grid_indices_around_sites.o cctbx/maptbx/boost_python/grid_tags.o cctbx/maptbx/boost_python/gridding.o cctbx/maptbx/boost_python/misc.o cctbx/maptbx/boost_python/peak_search.o cctbx/maptbx/boost_python/pymol_interface.o cctbx/maptbx/boost_python/statistics.o cctbx/maptbx/boost_python/structure_factors.o cctbx/maptbx/boost_python/coordinate_transformers.o cctbx/maptbx/boost_python/mapper.o cctbx/maptbx/boost_python/basic_map.o cctbx/maptbx/boost_python/real_space_refinement.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_sgtbx_ext.so -shared -s cctbx/sgtbx/boost_python/sgtbx_ext.o cctbx/sgtbx/boost_python/brick.o cctbx/sgtbx/boost_python/change_of_basis.o cctbx/sgtbx/boost_python/find_affine.o cctbx/sgtbx/boost_python/lattice_symmetry.o cctbx/sgtbx/boost_python/phase_info.o cctbx/sgtbx/boost_python/reciprocal_space_asu.o cctbx/sgtbx/boost_python/rot_mx.o cctbx/sgtbx/boost_python/rt_mx.o cctbx/sgtbx/boost_python/search_symmetry.o cctbx/sgtbx/boost_python/seminvariant.o cctbx/sgtbx/boost_python/site_symmetry.o cctbx/sgtbx/boost_python/space_group.o cctbx/sgtbx/boost_python/space_group_type.o cctbx/sgtbx/boost_python/sym_equiv_sites.o cctbx/sgtbx/boost_python/symbols.o cctbx/sgtbx/boost_python/tensor_rank_2.o cctbx/sgtbx/boost_python/tr_vec.o cctbx/sgtbx/boost_python/wyckoff.o cctbx/sgtbx/boost_python/select_generators.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_xray_ext.so -shared -s cctbx/xray/boost_python/xray_ext.o cctbx/xray/boost_python/conversions.o cctbx/xray/boost_python/gradient_flags.o cctbx/xray/boost_python/gradients_direct.o cctbx/xray/boost_python/fast_gradients.o cctbx/xray/boost_python/minimization.o cctbx/xray/boost_python/scatterer_flags.o cctbx/xray/boost_python/scatterer.o cctbx/xray/boost_python/scattering_type_registry.o cctbx/xray/boost_python/sampling_base.o cctbx/xray/boost_python/sampled_model_density.o cctbx/xray/boost_python/structure_factors_direct.o cctbx/xray/boost_python/structure_factors_simple.o cctbx/xray/boost_python/curvatures_simple.o cctbx/xray/boost_python/targets.o cctbx/xray/boost_python/f_model_bpl.o cctbx/xray/boost_python/twin_targets.o cctbx/xray/boost_python/grouped_data.o cctbx/xray/boost_python/parameter_map.o cctbx/xray/boost_python/twin_components.o cctbx/xray/boost_python/extinction.o cctbx/xray/targets/shelxl_wght_ls_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_xray_scattering_ext.so -shared -s cctbx/eltbx/boost_python/xray_scattering_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_crystal_ext.so -shared -s cctbx/crystal/crystal_ext.o cctbx/crystal/asu_clusters_bpl.o cctbx/crystal/close_packing_bpl.o cctbx/crystal/coordination_sequences_bpl.o cctbx/crystal/direct_space_asu_bpl.o cctbx/crystal/incremental_pairs_bpl.o cctbx/crystal/neighbors_bpl.o cctbx/crystal/pair_tables_bpl.o cctbx/crystal/site_cluster_analysis_bpl.o cctbx/crystal/symmetry_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_henke_ext.so -shared -s cctbx/eltbx/boost_python/henke_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_orientation_ext.so -shared -s cctbx/boost_python/orientation_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_adptbx_ext.so -shared -s cctbx/adptbx/boost_python/adptbx_ext.o cctbx/adptbx/boost_python/hirshfeld.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_adp_restraints_ext.so -shared -s cctbx/adp_restraints/adp_restraints_bpl.o cctbx/adp_restraints/adp_restraints_ext.o cctbx/adp_restraints/rigid_bond_bpl.o cctbx/adp_restraints/adp_similarity_bpl.o cctbx/adp_restraints/isotropic_adp_bpl.o cctbx/adp_restraints/aniso_restraints_bpl.o cctbx/adp_restraints/fixed_u_eq_adp_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_chemical_elements_ext.so -shared -s cctbx/eltbx/boost_python/chemical_elements_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_tiny_pse_ext.so -shared -s cctbx/eltbx/boost_python/tiny_pse_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_dmtbx_ext.so -shared -s cctbx/dmtbx/boost_python/dmtbx_ext.o cctbx/dmtbx/boost_python/triplet_phase_relation.o cctbx/dmtbx/boost_python/triplet_generator.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_icsd_radii_ext.so -shared -s cctbx/eltbx/boost_python/icsd_radii_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_xray_observations_ext.so -shared -s cctbx/xray/observations/boost_python/observations.o cctbx/xray/observations/boost_python/observations_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_miller_ext.so -shared -s cctbx/miller/boost_python/miller_ext.o cctbx/miller/boost_python/asu.o cctbx/miller/boost_python/bins.o cctbx/miller/boost_python/change_basis.o cctbx/miller/boost_python/expand_to_p1.o cctbx/miller/boost_python/index_generator.o cctbx/miller/boost_python/index_span.o cctbx/miller/boost_python/match_bijvoet_mates.o cctbx/miller/boost_python/match_indices.o cctbx/miller/boost_python/match_multi_indices.o cctbx/miller/boost_python/merge_equivalents.o cctbx/miller/boost_python/phase_integrator.o cctbx/miller/boost_python/phase_transfer.o cctbx/miller/boost_python/sym_equiv.o cctbx/miller/boost_python/f_calc_map.o cctbx/miller/boost_python/lookup_utils.o cctbx/miller/boost_python/amplitude_normalisation.o cctbx/miller/boost_python/randomize_amplitude_and_phase.o cctbx/miller/boost_python/slices.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_translation_search_ext.so -shared -s cctbx/translation_search/boost_python/translation_search_ext.o cctbx/translation_search/boost_python/fast_nv1995.o cctbx/translation_search/boost_python/fast_terms.o cctbx/translation_search/boost_python/symmetry_flags.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_covariance_ext.so -shared -s cctbx/covariance/boost_python/covariance_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_neutron_ext.so -shared -s cctbx/eltbx/boost_python/neutron_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_sgtbx_asu_ext.so -shared -s cctbx/sgtbx/direct_space_asu/proto/asu_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx_sgtbx_asu -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_fp_fdp_ext.so -shared -s cctbx/eltbx/boost_python/fp_fdp_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_emma_ext.so -shared -s cctbx/boost_python/emma_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_geometry_restraints_ext.so -shared -s cctbx/geometry_restraints/geometry_restraints_ext.o cctbx/geometry_restraints/bond_bpl.o cctbx/geometry_restraints/bond_similarity_bpl.o cctbx/geometry_restraints/bond_sorted_bpl.o cctbx/geometry_restraints/nonbonded_bpl.o cctbx/geometry_restraints/nonbonded_sorted_bpl.o cctbx/geometry_restraints/angle_bpl.o cctbx/geometry_restraints/dihedral_bpl.o cctbx/geometry_restraints/chirality_bpl.o cctbx/geometry_restraints/planarity_bpl.o cctbx/geometry_restraints/motif_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_array_family_flex_ext.so -shared -s cctbx/array_family/boost_python/flex_ext.o cctbx/array_family/boost_python/flex_hendrickson_lattman.o cctbx/array_family/boost_python/flex_miller_index.o cctbx/array_family/boost_python/flex_xray_scatterer.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_masks_ext.so -shared -s cctbx/masks/boost_python/masks_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_uctbx_ext.so -shared -s cctbx/uctbx/boost_python/uctbx_ext.o cctbx/uctbx/boost_python/fast_minimum_reduction.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_symmetry_search_ext.so -shared -s cctbx/symmetry_search/boost_python/symmetry_search_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_sasaki_ext.so -shared -s cctbx/eltbx/boost_python/sasaki_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_covalent_radii_ext.so -shared -s cctbx/eltbx/boost_python/covalent_radii_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_statistics_ext.so -shared -s cctbx/boost_python/statistics_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/cctbx_eltbx_wavelengths_ext.so -shared -s cctbx/eltbx/boost_python/wavelengths_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
gcc -o ucif/antlr3/src/antlr3cyclicdfa.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3cyclicdfa.c
gcc -o ucif/antlr3/src/antlr3debughandlers.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3debughandlers.c
gcc -o ucif/antlr3/src/antlr3encodings.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3encodings.c
gcc -o ucif/antlr3/src/antlr3exception.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3exception.c
gcc -o ucif/antlr3/src/antlr3filestream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3filestream.c
gcc -o ucif/antlr3/src/antlr3inputstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3inputstream.c
gcc -o ucif/antlr3/src/antlr3intstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3intstream.c
gcc -o ucif/antlr3/src/antlr3lexer.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3lexer.c
gcc -o ucif/antlr3/src/antlr3parser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3parser.c
gcc -o ucif/antlr3/src/antlr3rewritestreams.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3rewritestreams.c
gcc -o ucif/antlr3/src/antlr3string.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3string.c
gcc -o ucif/antlr3/src/antlr3tokenstream.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3tokenstream.c
gcc -o ucif/antlr3/src/antlr3treeparser.o -c -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/antlr3/src/antlr3treeparser.c
g++ -o ucif/cifParser.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/cifParser.cpp
g++ -o ucif/cifLexer.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DANTLR3_NODEBUGGER -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3/include -I/home/afyfe/cctbx/cctbx_sources/ucif/antlr3 /home/afyfe/cctbx/cctbx_sources/ucif/cifLexer.cpp
g++ -o lib/iotbx_detectors_bruker_ext.so -shared -s iotbx/detectors/bruker_ext.o iotbx/detectors/bruker.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_detectors_ext.so -shared -s iotbx/detectors/detectors_ext.o iotbx/detectors/image_divider.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_dtrek_ext.so -shared -s iotbx/misc/boost_python/dtrek_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/libiotbx_mtz.so -shared -s iotbx/mtz/object.o iotbx/mtz/crystal.o iotbx/mtz/dataset.o iotbx/mtz/column.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lccp4io -lm
g++ -o lib/libiotbx_pdb.so -shared -s iotbx/pdb/hybrid_36_c.o iotbx/pdb/hybrid_36_cpp.o iotbx/pdb/utils.o iotbx/pdb/write_utils.o iotbx/pdb/hierarchy.o iotbx/pdb/hierarchy_select.o iotbx/pdb/hierarchy_atoms.o iotbx/pdb/construct_hierarchy.o iotbx/pdb/overall_counts.o iotbx/pdb/hierarchy_write.o iotbx/pdb/atom_selection.o iotbx/pdb/input.o iotbx/pdb/input_write.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o lib/iotbx_mtz_ext.so -shared -s iotbx/mtz/ext.o iotbx/mtz/object_bpl.o iotbx/mtz/crystal_bpl.o iotbx/mtz/dataset_bpl.o iotbx/mtz/column_bpl.o iotbx/mtz/batch_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -liotbx_mtz -lcctbx -lccp4io -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_pdb_ext.so -shared -s iotbx/pdb/ext.o iotbx/pdb/hybrid_36_bpl.o iotbx/pdb/common_residue_names_bpl.o iotbx/pdb/rna_dna_atom_names_bpl.o iotbx/pdb/input_bpl.o iotbx/pdb/xray_structure_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_pdb_hierarchy_ext.so -shared -s iotbx/pdb/hierarchy_ext.o iotbx/pdb/hierarchy_atom_bpl.o iotbx/pdb/hierarchy_atoms_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -liotbx_pdb -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/iotbx_scalepack_ext.so -shared -s iotbx/misc/boost_python/scalepack_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o lib/iotbx_shelx_ext.so -shared -s iotbx/shelx/shelx_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_wildcard_ext.so -shared -s iotbx/wildcard_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o lib/iotbx_xplor_ext.so -shared -s iotbx/xplor/boost_python/xplor_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o mmtbx/masks/atom_mask.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/masks/atom_mask.cpp
g++ -o rstbx/dps_core/dps_core.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/dps_core/dps_core.cpp
g++ -o rstbx/dps_core/directional_fft.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/dps_core/directional_fft.cpp
g++ -o lib/iotbx_cif_ext.so -shared -s ucif/antlr3/src/antlr3baserecognizer.o ucif/antlr3/src/antlr3basetree.o ucif/antlr3/src/antlr3basetreeadaptor.o ucif/antlr3/src/antlr3bitset.o ucif/antlr3/src/antlr3collections.o ucif/antlr3/src/antlr3commontoken.o ucif/antlr3/src/antlr3commontree.o ucif/antlr3/src/antlr3commontreeadaptor.o ucif/antlr3/src/antlr3commontreenodestream.o ucif/antlr3/src/antlr3convertutf.o ucif/antlr3/src/antlr3cyclicdfa.o ucif/antlr3/src/antlr3debughandlers.o ucif/antlr3/src/antlr3encodings.o ucif/antlr3/src/antlr3exception.o ucif/antlr3/src/antlr3filestream.o ucif/antlr3/src/antlr3inputstream.o ucif/antlr3/src/antlr3intstream.o ucif/antlr3/src/antlr3lexer.o ucif/antlr3/src/antlr3parser.o ucif/antlr3/src/antlr3rewritestreams.o ucif/antlr3/src/antlr3string.o ucif/antlr3/src/antlr3tokenstream.o ucif/antlr3/src/antlr3treeparser.o iotbx/cif/boost_python/cif_ext.o ucif/cifParser.o ucif/cifLexer.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o rstbx/dps_core/direction.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/dps_core/direction.cpp
g++ -o rstbx/diffraction/ewald_sphere.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/diffraction/ewald_sphere.cpp
g++ -o rstbx/diffraction/partial_spot_position_partial_H.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/diffraction/partial_spot_position_partial_H.cpp
g++ -o scitbx/minpack/raw.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/minpack/raw.cpp
gcc -o scitbx/slatec/lib_c.o -c -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB /home/afyfe/cctbx/cctbx_sources/scitbx/slatec/lib_c.c
g++ -o lib/librstbx.so -shared -s rstbx/dps_core/dps_core.o rstbx/dps_core/directional_fft.o rstbx/dps_core/direction.o rstbx/diffraction/ewald_sphere.o rstbx/diffraction/partial_spot_position_partial_H.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lm
g++ -o smtbx/refinement/constraints/geometrical_hydrogens.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/geometrical_hydrogens.cpp
g++ -o lib/libscitbx_slatec.so -shared -s scitbx/slatec/lib_c.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o smtbx/refinement/constraints/occupancy.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/occupancy.cpp
g++ -o lib/libscitbx_minpack.so -shared -s scitbx/minpack/raw.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o smtbx/refinement/constraints/reparametrisation.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/reparametrisation.cpp
g++ -o smtbx/refinement/constraints/rigid.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/rigid.cpp
g++ -o smtbx/refinement/constraints/same_group.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/same_group.cpp
g++ -o smtbx/refinement/constraints/shared.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/shared.cpp
g++ -o smtbx/refinement/constraints/special_position.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/special_position.cpp
g++ -o lib/libmmtbx_masks.so -shared -s mmtbx/masks/atom_mask.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm
g++ -o smtbx/refinement/constraints/symmetry_equivalent.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/symmetry_equivalent.cpp
g++ -o smtbx/refinement/constraints/u_eq_dependent_u_iso.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/u_eq_dependent_u_iso.cpp
g++ -o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/u_iso_dependent_u_iso.cpp
g++ -o spotfinder/core_toolbox/spot.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/spot.cpp
g++ -o spotfinder/core_toolbox/libdistl.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/libdistl.cpp
g++ -o spotfinder/core_toolbox/hough.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/hough.cpp
g++ -o spotfinder/core_toolbox/distl.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/distl.cpp
g++ -o lib/libsmtbx_refinement_constraints.so -s -shared smtbx/refinement/constraints/geometrical_hydrogens.o smtbx/refinement/constraints/occupancy.o smtbx/refinement/constraints/reparametrisation.o smtbx/refinement/constraints/rigid.o smtbx/refinement/constraints/same_group.o smtbx/refinement/constraints/shared.o smtbx/refinement/constraints/special_position.o smtbx/refinement/constraints/symmetry_equivalent.o smtbx/refinement/constraints/u_eq_dependent_u_iso.o smtbx/refinement/constraints/u_iso_dependent_u_iso.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o spotfinder/core_toolbox/spotfilter.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/spotfilter.cpp
g++ -o mmtbx/alignment_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include /home/afyfe/cctbx/cctbx_sources/mmtbx/alignment_ext.cpp
g++ -o mmtbx/bulk_solvent/bulk_solvent_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent_ext.cpp
g++ -o lib/libspotfinder.so -shared -s spotfinder/core_toolbox/spot.o spotfinder/core_toolbox/libdistl.o spotfinder/core_toolbox/hough.o spotfinder/core_toolbox/distl.o spotfinder/core_toolbox/spotfilter.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lann -lomptbx -lm
g++ -o mmtbx/bulk_solvent/bulk_solvent.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/bulk_solvent/bulk_solvent.cpp
g++ -o mmtbx/cablam/boost_python/cablam_align_utils_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/cablam/boost_python/cablam_align_utils_ext.cpp
g++ -o lib/mmtbx_alignment_ext.so -shared -s mmtbx/alignment_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/den/boost_python/den_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/den/boost_python/den_ext.cpp
g++ -o lib/mmtbx_cablam_align_utils_ext.so -shared -s mmtbx/cablam/boost_python/cablam_align_utils_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/dynamics/dynamics_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/dynamics/dynamics_ext.cpp
g++ -o mmtbx/dynamics/dynamics.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/dynamics/dynamics.cpp
g++ -o mmtbx/f_model/f_model_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/f_model/f_model_ext.cpp
g++ -o lib/mmtbx_dynamics_ext.so -shared -s mmtbx/dynamics/dynamics_ext.o mmtbx/dynamics/dynamics.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/geometry_restraints/boost_python/hbond_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/geometry_restraints/boost_python/hbond_ext.cpp
g++ -o lib/mmtbx_bulk_solvent_ext.so -shared -s mmtbx/bulk_solvent/bulk_solvent_ext.o mmtbx/bulk_solvent/bulk_solvent.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/mmtbx_den_restraints_ext.so -shared -s mmtbx/den/boost_python/den_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/masks/masks_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/masks/masks_ext.cpp
g++ -o mmtbx/max_lik/max_lik_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/max_lik/max_lik_ext.cpp
g++ -o lib/mmtbx_f_model_ext.so -shared -s mmtbx/f_model/f_model_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/max_lik/max_lik.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/max_lik/max_lik.cpp
g++ -o lib/mmtbx_masks_ext.so -shared -s mmtbx/masks/masks_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lmmtbx_masks -lcctbx_sgtbx_asu -lcctbx -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/ncs/restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/ncs/restraints_ext.cpp
g++ -o mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/geometry_restraints/boost_python/ramachandran_ext.cpp
g++ -o lib/mmtbx_max_lik_ext.so -shared -s mmtbx/max_lik/max_lik_ext.o mmtbx/max_lik/max_lik.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.cpp
g++ -o lib/mmtbx_ncs_restraints_ext.so -shared -s mmtbx/ncs/restraints_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/rsr/rsr_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/rsr/rsr_ext.cpp
g++ -o lib/mmtbx_hbond_restraints_ext.so -shared -s mmtbx/geometry_restraints/boost_python/hbond_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/scaling/scaling_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/scaling/scaling_ext.cpp
g++ -o lib/mmtbx_reference_coordinate_ext.so -shared -s mmtbx/geometry_restraints/boost_python/reference_coordinate_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/scaling/twinning_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/scaling/twinning_bpl.cpp
g++ -o lib/mmtbx_rsr_ext.so -shared -s mmtbx/rsr/rsr_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/scaling/relative_scaling_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/scaling/relative_scaling_bpl.cpp
g++ -o lib/mmtbx_ramachandran_restraints_ext.so -shared -s mmtbx/geometry_restraints/boost_python/ramachandran_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/scaling/outlier_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/scaling/outlier_bpl.cpp
g++ -o mmtbx/secondary_structure/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/ccp4io/lib/libccp4/ccp4 -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/mmtbx/secondary_structure/ext.cpp
g++ -o lib/mmtbx_secondary_structure_ext.so -shared -s mmtbx/secondary_structure/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o mmtbx/tls/tls_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/tls/tls_ext.cpp
g++ -o mmtbx/utils/utils_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/utils/utils_ext.cpp
g++ -o omptbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/omptbx/ext.cpp
g++ -o lib/mmtbx_scaling_ext.so -shared -s mmtbx/scaling/scaling_ext.o mmtbx/scaling/twinning_bpl.o mmtbx/scaling/relative_scaling_bpl.o mmtbx/scaling/outlier_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/array_family/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/array_family/ext.cpp
g++ -o rstbx/array_family/flex_rstbx_arrays.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/array_family/flex_rstbx_arrays.cpp
g++ -o lib/omptbx_ext.so -shared -s omptbx/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lomptbx -lboost_python -lm
g++ -o rstbx/bandpass/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/bandpass/ext.cpp
g++ -o lib/mmtbx_utils_ext.so -shared -s mmtbx/utils/utils_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/bpcx/detector_model/detector_model_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/bpcx/detector_model/detector_model_ext.cpp
g++ -o rstbx/bpcx/detector_model/sensor.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/bpcx/detector_model/sensor.cpp
g++ -o lib/rstbx_bpcx_detector_model_ext.so -shared -s rstbx/bpcx/detector_model/detector_model_ext.o rstbx/bpcx/detector_model/sensor.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/diffraction/fastbragg/fastbragg_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/diffraction/fastbragg/fastbragg_ext.cpp
g++ -o lib/mmtbx_tls_ext.so -shared -s mmtbx/tls/tls_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/diffraction/fastbragg/fastbragg.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/diffraction/fastbragg/fastbragg.cpp
g++ -o rstbx/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/ext.cpp
g++ -o lib/rstbx_bandpass_ext.so -shared -s rstbx/bandpass/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lann -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/apps/integration_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/apps/integration_ext.cpp
g++ -o lib/rstbx_diffraction_fastbragg_ext.so -shared -s rstbx/diffraction/fastbragg/fastbragg_ext.o rstbx/diffraction/fastbragg/fastbragg.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/simage/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/simage/ext.cpp
g++ -o lib/rstbx_array_family_flex_ext.so -shared -s rstbx/array_family/ext.o rstbx/array_family/flex_rstbx_arrays.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/simulation/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/simulation/ext.cpp
g++ -o lib/rstbx_ext.so -shared -s rstbx/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o lib/rstbx_integration_ext.so -shared -s rstbx/apps/integration_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lann -lspotfinder -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o rstbx/symmetry/constraints/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_build/include -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include /home/afyfe/cctbx/cctbx_sources/rstbx/symmetry/constraints/ext.cpp
g++ -o scitbx/array_family/boost_python/flex_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_ext.cpp
g++ -o lib/rstbx_simage_ext.so -shared -s rstbx/simage/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_grid.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_grid.cpp
g++ -o lib/rstbx_simulation_ext.so -shared -s rstbx/simulation/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_bool.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_bool.cpp
g++ -o lib/rstbx_symmetry_constraints_ext.so -shared -s rstbx/symmetry/constraints/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lrstbx -lcctbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/flex_size_t.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_size_t.cpp
g++ -o scitbx/array_family/boost_python/flex_int.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_int.cpp
g++ -o scitbx/array_family/boost_python/flex_long.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_long.cpp
g++ -o scitbx/array_family/boost_python/flex_float.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_float.cpp
g++ -o scitbx/array_family/boost_python/flex_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_double_matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_double_matrix.cpp
g++ -o scitbx/array_family/boost_python/flex_complex_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_complex_double.cpp
g++ -o scitbx/array_family/boost_python/flex_std_string.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_std_string.cpp
g++ -o scitbx/array_family/boost_python/flex_random.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_random.cpp
g++ -o scitbx/array_family/boost_python/flex_sort.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_sort.cpp
g++ -o scitbx/array_family/boost_python/flex_histogram.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_histogram.cpp
g++ -o scitbx/array_family/boost_python/flex_mean_and_variance.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_mean_and_variance.cpp
g++ -o scitbx/array_family/boost_python/flex_median.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_median.cpp
g++ -o scitbx/array_family/boost_python/flex_linear_interpolation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_linear_interpolation.cpp
g++ -o scitbx/array_family/boost_python/flex_vec3_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_vec3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_vec2_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_vec2_double.cpp
g++ -o scitbx/array_family/boost_python/flex_sym_mat3_double.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_sym_mat3_double.cpp
g++ -o scitbx/array_family/boost_python/flex_tiny_size_t_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/flex_tiny_size_t_2.cpp
g++ -o scitbx/array_family/boost_python/loops.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/loops.cpp
g++ -o scitbx/array_family/boost_python/show_sizes.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/show_sizes.cpp
g++ -o scitbx/array_family/boost_python/numpy_bridge.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DSCITBX_HAVE_NUMPY_INCLUDE -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/usr/lib/python2.7/dist-packages/numpy/core/include /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/numpy_bridge.cpp
g++ -o scitbx/array_family/boost_python/shared_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/shared_ext.cpp
g++ -o scitbx/cubicle_neighbors_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/cubicle_neighbors_ext.cpp
g++ -o scitbx/fftpack/boost_python/fftpack_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/fftpack/boost_python/fftpack_ext.cpp
g++ -o lib/scitbx_cubicle_neighbors_ext.so -shared -s scitbx/cubicle_neighbors_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/graphics_utils/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/graphics_utils/ext.cpp
g++ -o lib/scitbx_array_family_flex_ext.so -shared -s scitbx/array_family/boost_python/flex_ext.o scitbx/array_family/boost_python/flex_grid.o scitbx/array_family/boost_python/flex_bool.o scitbx/array_family/boost_python/flex_size_t.o scitbx/array_family/boost_python/flex_int.o scitbx/array_family/boost_python/flex_long.o scitbx/array_family/boost_python/flex_float.o scitbx/array_family/boost_python/flex_double.o scitbx/array_family/boost_python/flex_double_matrix.o scitbx/array_family/boost_python/flex_complex_double.o scitbx/array_family/boost_python/flex_std_string.o scitbx/array_family/boost_python/flex_random.o scitbx/array_family/boost_python/flex_sort.o scitbx/array_family/boost_python/flex_histogram.o scitbx/array_family/boost_python/flex_mean_and_variance.o scitbx/array_family/boost_python/flex_median.o scitbx/array_family/boost_python/flex_linear_interpolation.o scitbx/array_family/boost_python/flex_vec3_double.o scitbx/array_family/boost_python/flex_vec2_double.o scitbx/array_family/boost_python/flex_sym_mat3_double.o scitbx/array_family/boost_python/flex_tiny_size_t_2.o scitbx/array_family/boost_python/loops.o scitbx/array_family/boost_python/show_sizes.o scitbx/array_family/boost_python/numpy_bridge.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/iso_surface/iso_surface_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/iso_surface/iso_surface_ext.cpp
g++ -o lib/scitbx_graphics_utils_ext.so -shared -s scitbx/graphics_utils/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/lbfgs/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -DSCITBX_LBFGS_HAVE_LBFGS_FEM -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgs/ext.cpp
g++ -o lib/scitbx_iso_surface_ext.so -shared -s scitbx/iso_surface/iso_surface_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/lbfgs/lbfgs_fem.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/fable scitbx/lbfgs/lbfgs_fem.cpp
g++ -o lib/scitbx_fftpack_ext.so -shared -s scitbx/fftpack/boost_python/fftpack_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/lbfgsb/boost_python/lbfgsb_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgsb/boost_python/lbfgsb_ext.cpp
g++ -o lib/scitbx_array_family_shared_ext.so -shared -s scitbx/array_family/boost_python/shared_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/linalg/boost_python/linalg_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/linalg_ext.cpp
g++ -o scitbx/linalg/boost_python/matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/matrix.cpp
g++ -o scitbx/linalg/boost_python/cholesky.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/cholesky.cpp
g++ -o scitbx/linalg/boost_python/householder.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/householder.cpp
g++ -o lib/scitbx_lbfgs_ext.so -shared -s scitbx/lbfgs/ext.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/linalg/boost_python/svd.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/svd.cpp
g++ -o lib/scitbx_lbfgsb_ext.so -shared -s scitbx/lbfgsb/boost_python/lbfgsb_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/linalg/boost_python/eigensystem.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/eigensystem.cpp
g++ -o scitbx/linalg/boost_python/lapack_fem_bpl.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -DSCITBX_LAPACK_FEM -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/fable /home/afyfe/cctbx/cctbx_sources/scitbx/linalg/boost_python/lapack_fem_bpl.cpp
g++ -o scitbx/lstbx/boost_python/lstbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/lstbx/boost_python/lstbx_ext.cpp
g++ -o scitbx/lstbx/boost_python/normal_equations.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/lstbx/boost_python/normal_equations.cpp
g++ -o scitbx/math/boost_python/math_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/math_ext.cpp
g++ -o scitbx/math/boost_python/basic_statistics.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/basic_statistics.cpp
g++ -o scitbx/math/boost_python/gaussian.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/gaussian.cpp
g++ -o lib/scitbx_lstbx_normal_equations_ext.so -shared -s scitbx/lstbx/boost_python/lstbx_ext.o scitbx/lstbx/boost_python/normal_equations.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/golay.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/golay.cpp
g++ -o scitbx/math/boost_python/minimum_covering_sphere.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/minimum_covering_sphere.cpp
g++ -o scitbx/math/boost_python/principal_axes_of_inertia.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/principal_axes_of_inertia.cpp
g++ -o scitbx/math/boost_python/row_echelon.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/row_echelon.cpp
g++ -o scitbx/math/boost_python/tensor_rank_2.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/tensor_rank_2.cpp
g++ -o scitbx/math/boost_python/chebyshev.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/chebyshev.cpp
g++ -o scitbx/math/boost_python/icosahedron.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/icosahedron.cpp
g++ -o scitbx/math/boost_python/slatec.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/slatec.cpp
g++ -o scitbx/math/boost_python/line_search.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/line_search.cpp
g++ -o scitbx/math/boost_python/r3_rotation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/r3_rotation.cpp
g++ -o scitbx/math/boost_python/resample.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/resample.cpp
g++ -o lib/scitbx_linalg_ext.so -shared -s scitbx/linalg/boost_python/linalg_ext.o scitbx/linalg/boost_python/matrix.o scitbx/linalg/boost_python/cholesky.o scitbx/linalg/boost_python/householder.o scitbx/linalg/boost_python/svd.o scitbx/linalg/boost_python/eigensystem.o scitbx/linalg/boost_python/lapack_fem_bpl.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/math/boost_python/quadrature.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/quadrature.cpp
g++ -o scitbx/math/boost_python/unimodular_generator.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/unimodular_generator.cpp
g++ -o scitbx/math/boost_python/halton.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/halton.cpp
g++ -o scitbx/math/boost_python/least_squares_plane.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/least_squares_plane.cpp
g++ -o scitbx/math/boost_python/continued_fraction.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/continued_fraction.cpp
g++ -o scitbx/math/boost_python/numeric_limits.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/numeric_limits.cpp
g++ -o scitbx/math/boost_python/distributions.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/distributions.cpp
g++ -o scitbx/math/boost_python/exp_functions.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/exp_functions.cpp
g++ -o scitbx/math/boost_python/zernike.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/zernike.cpp
g++ -o scitbx/math/boost_python/zernike_moments.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/zernike_moments.cpp
g++ -o scitbx/math/boost_python/2d_zernike_moments.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/2d_zernike_moments.cpp
g++ -o scitbx/math/boost_python/weighted_covariance.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/weighted_covariance.cpp
g++ -o scitbx/math/boost_python/rotation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/rotation.cpp
g++ -o scitbx/math/boost_python/interpolation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/math/boost_python/interpolation.cpp
g++ -o scitbx/minpack/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/minpack/ext.cpp
g++ -o scitbx/r3_utils_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/r3_utils_ext.cpp
g++ -o scitbx/random/boost_python/random_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/random/boost_python/random_ext.cpp
g++ -o lib/scitbx_math_ext.so -shared -s scitbx/math/boost_python/math_ext.o scitbx/math/boost_python/basic_statistics.o scitbx/math/boost_python/gaussian.o scitbx/math/boost_python/golay.o scitbx/math/boost_python/minimum_covering_sphere.o scitbx/math/boost_python/principal_axes_of_inertia.o scitbx/math/boost_python/row_echelon.o scitbx/math/boost_python/tensor_rank_2.o scitbx/math/boost_python/chebyshev.o scitbx/math/boost_python/icosahedron.o scitbx/math/boost_python/slatec.o scitbx/math/boost_python/line_search.o scitbx/math/boost_python/r3_rotation.o scitbx/math/boost_python/resample.o scitbx/math/boost_python/quadrature.o scitbx/math/boost_python/unimodular_generator.o scitbx/math/boost_python/halton.o scitbx/math/boost_python/least_squares_plane.o scitbx/math/boost_python/continued_fraction.o scitbx/math/boost_python/numeric_limits.o scitbx/math/boost_python/distributions.o scitbx/math/boost_python/exp_functions.o scitbx/math/boost_python/zernike.o scitbx/math/boost_python/zernike_moments.o scitbx/math/boost_python/2d_zernike_moments.o scitbx/math/boost_python/weighted_covariance.o scitbx/math/boost_python/rotation.o scitbx/math/boost_python/interpolation.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_slatec -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/random/boost_python/basic_distributions.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/random/boost_python/basic_distributions.cpp
g++ -o lib/scitbx_r3_utils_ext.so -shared -s scitbx/r3_utils_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/rigid_body/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/rigid_body/ext.cpp
g++ -o scitbx/sparse/boost_python/vector.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/vector.cpp
g++ -o lib/scitbx_minpack_ext.so -shared -s scitbx/minpack/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_minpack -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/sparse/boost_python/matrix.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/matrix.cpp
g++ -o lib/scitbx_random_ext.so -shared -s scitbx/random/boost_python/random_ext.o scitbx/random/boost_python/basic_distributions.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/sparse/boost_python/approx_equal.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/approx_equal.cpp
g++ -o scitbx/sparse/boost_python/random.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/random.cpp
g++ -o scitbx/sparse/boost_python/lu_factorization.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/lu_factorization.cpp
g++ -o scitbx/sparse/boost_python/sparse_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/boost_python/sparse_ext.cpp
g++ -o scitbx/stl/map_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/stl/map_ext.cpp
g++ -o lib/scitbx_rigid_body_ext.so -shared -s scitbx/rigid_body/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/stl/set_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/stl/set_ext.cpp
g++ -o scitbx/stl/vector_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/stl/vector_ext.cpp
g++ -o lib/scitbx_sparse_ext.so -shared -s scitbx/sparse/boost_python/vector.o scitbx/sparse/boost_python/matrix.o scitbx/sparse/boost_python/approx_equal.o scitbx/sparse/boost_python/random.o scitbx/sparse/boost_python/lu_factorization.o scitbx/sparse/boost_python/sparse_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/wigner/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/wigner/ext.cpp
g++ -o lib/scitbx_stl_set_ext.so -shared -s scitbx/stl/set_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/ab_initio/ab_initio_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/ab_initio/ab_initio_ext.cpp
g++ -o lib/scitbx_wigner_ext.so -shared -s scitbx/wigner/ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/array_family/af_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/array_family/af_ext.cpp
g++ -o lib/smtbx_ab_initio_ext.so -shared -s smtbx/ab_initio/ab_initio_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/constraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/constraints_ext.cpp
g++ -o lib/smtbx_array_family_ext.so -shared -s smtbx/array_family/af_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/direction.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/direction.cpp
g++ -o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/geometrical_hydrogens.cpp
g++ -o lib/scitbx_stl_vector_ext.so -shared -s scitbx/stl/vector_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/independent_scalar_parameters.cpp
g++ -o lib/scitbx_stl_map_ext.so -shared -s scitbx/stl/map_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o smtbx/refinement/constraints/boost_python/occupancy.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/occupancy.cpp
g++ -o smtbx/refinement/constraints/boost_python/reparametrisation.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/reparametrisation.cpp
g++ -o smtbx/refinement/constraints/boost_python/rigid.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/rigid.cpp
g++ -o smtbx/refinement/constraints/boost_python/same_group.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/same_group.cpp
g++ -o smtbx/refinement/constraints/boost_python/scatterer_parameters.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/scatterer_parameters.cpp
g++ -o smtbx/refinement/constraints/boost_python/shared.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/shared.cpp
g++ -o smtbx/refinement/constraints/boost_python/special_position.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/special_position.cpp
g++ -o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/symmetry_equivalent.cpp
g++ -o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.cpp
g++ -o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.cpp
g++ -o smtbx/refinement/boost_python/least_squares_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/boost_python/least_squares_ext.cpp
g++ -o smtbx/refinement/boost_python/weighting_schemes.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/boost_python/weighting_schemes.cpp
g++ -o smtbx/refinement/boost_python/least_squares.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/boost_python/least_squares.cpp
g++ -o smtbx/refinement/restraints/boost_python/origin_fixing.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/restraints/boost_python/origin_fixing.cpp
g++ -o lib/smtbx_refinement_constraints_ext.so -shared -s smtbx/refinement/constraints/boost_python/constraints_ext.o smtbx/refinement/constraints/boost_python/direction.o smtbx/refinement/constraints/boost_python/geometrical_hydrogens.o smtbx/refinement/constraints/boost_python/independent_scalar_parameters.o smtbx/refinement/constraints/boost_python/occupancy.o smtbx/refinement/constraints/boost_python/reparametrisation.o smtbx/refinement/constraints/boost_python/rigid.o smtbx/refinement/constraints/boost_python/same_group.o smtbx/refinement/constraints/boost_python/scatterer_parameters.o smtbx/refinement/constraints/boost_python/shared.o smtbx/refinement/constraints/boost_python/special_position.o smtbx/refinement/constraints/boost_python/symmetry_equivalent.o smtbx/refinement/constraints/boost_python/u_eq_dependent_u_iso.o smtbx/refinement/constraints/boost_python/u_iso_dependent_u_iso.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_python -lm
g++ -o smtbx/refinement/restraints/boost_python/restraints_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/restraints/boost_python/restraints_ext.cpp
g++ -o smtbx/stl/map_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/stl/map_ext.cpp
g++ -o lib/smtbx_refinement_least_squares_ext.so -shared -s smtbx/refinement/boost_python/least_squares_ext.o smtbx/refinement/boost_python/weighting_schemes.o smtbx/refinement/boost_python/least_squares.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lsmtbx_refinement_constraints -lscitbx_boost_python -lcctbx -lboost_python -lm
g++ -o smtbx/structure_factors/direct/boost_python/ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/structure_factors/direct/boost_python/ext.cpp
g++ -o smtbx/structure_factors/direct/boost_python/standard_xray.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/smtbx/structure_factors/direct/boost_python/standard_xray.cpp
g++ -o spotfinder/array_family/flex_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/spotfinder/array_family/flex_ext.cpp
g++ -o spotfinder/array_family/flex_distl_spot.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/spotfinder/array_family/flex_distl_spot.cpp
g++ -o lib/smtbx_stl_map_ext.so -shared -s smtbx/stl/map_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o spotfinder/core_toolbox/boost_python/distltbx_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/boost_python/distltbx_ext.cpp
g++ -o lib/smtbx_refinement_restraints_ext.so -shared -s smtbx/refinement/restraints/boost_python/origin_fixing.o smtbx/refinement/restraints/boost_python/restraints_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o spotfinder/diffraction/geometry.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/spotfinder/diffraction/geometry.cpp
g++ -o lib/smtbx_structure_factors_direct_ext.so -shared -s smtbx/structure_factors/direct/boost_python/ext.o smtbx/structure_factors/direct/boost_python/standard_xray.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lboost_python -lm
g++ -o spotfinder/core_toolbox/boost_python/hough_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/annlib -I/home/afyfe/cctbx/cctbx_sources/annlib/src -I/home/afyfe/cctbx/cctbx_sources/annlib/include -I/home/afyfe/cctbx/cctbx_sources/annlib_adaptbx/include -I/home/afyfe/cctbx/cctbx_build/annlib_adaptbx/include -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/spotfinder/core_toolbox/boost_python/hough_ext.cpp
g++ -o lib/std_pair_ext.so -shared -s boost_adaptbx/std_pair_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lboost_python -lm
g++ -o mmtbx/masks/tst_mask.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/mmtbx/masks/tst_mask.cpp
g++ -o lib/spotfinder_hough_ext.so -shared -s spotfinder/core_toolbox/boost_python/hough_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/boost_python/regression_test_ext.o -c -DBOOST_PYTHON_MAX_BASES=2 -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/usr/include/python2.7 /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/boost_python/regression_test_ext.cpp
g++ -o mmtbx/masks/tst_mask -s mmtbx/masks/tst_mask.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lmmtbx_masks -liotbx_pdb -lcctbx -lomptbx -lcctbx_sgtbx_asu -lm
g++ -o scitbx/array_family/tst_accessors.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_accessors.cpp
g++ -o lib/spotfinder_distltbx_ext.so -shared -s spotfinder/core_toolbox/boost_python/distltbx_ext.o spotfinder/diffraction/geometry.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/tst_af_1.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_af_1.cpp
g++ -o scitbx/array_family/tst_accessors -s scitbx/array_family/tst_accessors.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_2.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_af_2.cpp
g++ -o scitbx/array_family/boost_python/regression_test_ext.so -shared -s scitbx/array_family/boost_python/regression_test_ext.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/tst_af_3.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_af_3.cpp
g++ -o scitbx/array_family/tst_af_2 -s scitbx/array_family/tst_af_2.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_4.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_af_4.cpp
g++ -o scitbx/array_family/tst_af_1 -s scitbx/array_family/tst_af_1.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_3 -s scitbx/array_family/tst_af_3.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_af_5.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_af_5.cpp
g++ -o scitbx/array_family/tst_mat3.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_mat3.cpp
g++ -o scitbx/array_family/tst_af_5 -s scitbx/array_family/tst_af_5.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o lib/spotfinder_array_family_flex_ext.so -shared -s spotfinder/array_family/flex_ext.o spotfinder/array_family/flex_distl_spot.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lspotfinder -lomptbx -lscitbx_boost_python -lboost_python -lm
g++ -o scitbx/array_family/tst_optional_copy.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_optional_copy.cpp
g++ -o scitbx/array_family/tst_ref_matrix_facet.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_ref_matrix_facet.cpp
g++ -o scitbx/array_family/tst_mat3 -s scitbx/array_family/tst_mat3.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/array_family/tst_sym_mat3.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_sym_mat3.cpp
g++ -o scitbx/array_family/tst_optional_copy -s scitbx/array_family/tst_optional_copy.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_unsigned_float_arithmetic.cpp
g++ -o scitbx/array_family/tst_ref_matrix_facet -s scitbx/array_family/tst_ref_matrix_facet.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_vec3.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_build/include -Iscitbx/array_family -I/home/afyfe/cctbx/cctbx_sources/scitbx/array_family /home/afyfe/cctbx/cctbx_sources/scitbx/array_family/tst_vec3.cpp
g++ -o scitbx/array_family/tst_sym_mat3 -s scitbx/array_family/tst_sym_mat3.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/error/tst_error.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/error -I/home/afyfe/cctbx/cctbx_sources/scitbx/error /home/afyfe/cctbx/cctbx_sources/scitbx/error/tst_error.cpp
g++ -o scitbx/array_family/tst_unsigned_float_arithmetic -s scitbx/array_family/tst_unsigned_float_arithmetic.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/fftpack/timing/fftpack_timer.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/fftpack/timing/fftpack_timer.cpp
g++ -o scitbx/error/tst_error -s scitbx/error/tst_error.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/array_family/tst_vec3 -s scitbx/array_family/tst_vec3.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/fftpack/timing/test0.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/fftpack/timing/test0.cpp
g++ -o scitbx/lbfgs/sdrive_fem.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -I/home/afyfe/cctbx/cctbx_sources/fable scitbx/lbfgs/sdrive_fem.cpp
g++ -o scitbx/lbfgs/sdrive_fem -s scitbx/lbfgs/sdrive_fem.o scitbx/lbfgs/lbfgs_fem.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/lbfgs/tst_lbfgs.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgs/tst_lbfgs.cpp
g++ -o scitbx/lbfgs/tst_lbfgs -s scitbx/lbfgs/tst_lbfgs.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/lbfgsb/dev/driver1.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgsb/dev/driver1.cpp
g++ -o scitbx/fftpack/timing/fftpack_timer -s scitbx/fftpack/timing/fftpack_timer.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lomptbx -lm
g++ -o scitbx/lbfgsb/dev/driver2.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgsb/dev/driver2.cpp
g++ -o scitbx/fftpack/timing/test0 -s scitbx/fftpack/timing/test0.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lomptbx -lm
g++ -o scitbx/lbfgsb/dev/driver3.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources /home/afyfe/cctbx/cctbx_sources/scitbx/lbfgsb/dev/driver3.cpp
g++ -o scitbx/lbfgsb/dev/driver1 -s scitbx/lbfgsb/dev/driver1.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/math/tests/tst.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/math/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/math/tests /home/afyfe/cctbx/cctbx_sources/scitbx/math/tests/tst.cpp
g++ -o scitbx/lbfgsb/dev/driver2 -s scitbx/lbfgsb/dev/driver2.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/matrix/tests/tst_cholesky.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/matrix/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests /home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests/tst_cholesky.cpp
g++ -o scitbx/math/tests/tst -s scitbx/math/tests/tst.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/matrix/tests/tst_givens.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/matrix/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests /home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests/tst_givens.cpp
g++ -o scitbx/lbfgsb/dev/driver3 -s scitbx/lbfgsb/dev/driver3.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/matrix/tests/tst_householder.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/matrix/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests /home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests/tst_householder.cpp
g++ -o scitbx/matrix/tests/tst_givens -s scitbx/matrix/tests/tst_givens.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o scitbx/matrix/tests/tst_svd.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/matrix/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests /home/afyfe/cctbx/cctbx_sources/scitbx/matrix/tests/tst_svd.cpp
g++ -o scitbx/array_family/tst_af_4 -s scitbx/array_family/tst_af_4.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/serialization/tst_base_256.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -Wall -Wno-sign-compare -Wno-unknown-pragmas -Wno-parentheses -Winit-self -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/serialization -I/home/afyfe/cctbx/cctbx_sources/scitbx/serialization /home/afyfe/cctbx/cctbx_sources/scitbx/serialization/tst_base_256.cpp
g++ -o scitbx/serialization/tst_base_256 -s scitbx/serialization/tst_base_256.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lm
g++ -o scitbx/sparse/tests/tst_sparse.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Iscitbx/sparse/tests -I/home/afyfe/cctbx/cctbx_sources/scitbx/sparse/tests /home/afyfe/cctbx/cctbx_sources/scitbx/sparse/tests/tst_sparse.cpp
g++ -o scitbx/matrix/tests/tst_cholesky -s scitbx/matrix/tests/tst_cholesky.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.cpp
g++ -o scitbx/matrix/tests/tst_householder -s scitbx/matrix/tests/tst_householder.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/tests/tst_reparametrisation.cpp
g++ -o scitbx/matrix/tests/tst_svd -s scitbx/matrix/tests/tst_svd.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o smtbx/refinement/constraints/tests/tst_special_position.o -c -I/home/afyfe/cctbx/cctbx_sources/boost -fPIC -fno-strict-aliasing -w -DNDEBUG -O3 -ffast-math -DBOOST_ALL_NO_LIB -I/home/afyfe/cctbx/cctbx_build/include -I/home/afyfe/cctbx/cctbx_sources -Ismtbx/refinement/constraints -I/home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints /home/afyfe/cctbx/cctbx_sources/smtbx/refinement/constraints/tests/tst_special_position.cpp
g++ -o scitbx/sparse/tests/tst_sparse -s scitbx/sparse/tests/tst_sparse.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib
g++ -o smtbx/refinement/constraints/tests/tst_geometrical_hydrogens -s smtbx/refinement/constraints/tests/tst_geometrical_hydrogens.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lsmtbx_refinement_constraints
g++ -o smtbx/refinement/constraints/tests/tst_reparametrisation -s smtbx/refinement/constraints/tests/tst_reparametrisation.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lsmtbx_refinement_constraints
g++ -o smtbx/refinement/constraints/tests/tst_special_position -s smtbx/refinement/constraints/tests/tst_special_position.o -Llib -L/home/afyfe/cctbx/cctbx_sources/lib -lcctbx -lsmtbx_refinement_constraints
scons: done building targets.
usr+sys time: 19.13 seconds
wall clock time: 11 minutes 59.54 seconds (719.54 seconds total)

***
*** csh and tcsh users:
***     To use this installation in a new shell or process run the command:
***
***         source "/home/afyfe/cctbx/cctbx_build/setpaths.csh"
***
***     You may want to add this line to your .cshrc file.
***
*** sh and bash users:
***     To use this installation in a new shell or process run the command:
***
***         . "/home/afyfe/cctbx/cctbx_build/setpaths.sh"
***
***     You may want to add this line to your .profile or .bashrc file.
***