[cctbxbb] Adding columns to new *unmerged* MTZ object

[Phil Evans]

I thought you DIALS guys were going to use a new file format
Phil


On 12 Feb 2014, at 10:43, Graeme.Winter at Diamond.ac.uk wrote:

> In related news….
> 
> Should
> 
>  void
>  object::adjust_column_array_sizes(int new_nref)
>  {
>    CMtz::MTZ* p = ptr();
>    if (!p->refs_in_memory) return;
>    if (new_nref > p->nref) {
>      reserve(new_nref);
>      for(int i=0;i<p->nxtal;i++) {
>        for(int j=0;j<p->xtal[i]->nset;j++) {
>          for(int k=0;k<p->xtal[i]->set[j]->ncol;k++) {
>            CMtz::MTZCOL* col_k = p->xtal[i]->set[j]->col[k];
>            int old_size = column_array_size(col_k);
>            if (new_nref > old_size) {
>              ccp4array_resize(col_k->ref, new_nref);
>              for(int iref=old_size;iref<new_nref;iref++) {
>                *(reinterpret_cast<union float_uint_uchar*>(
>                  &col_k->ref[iref])) = not_a_number_value_;
>              }
>            }
>          }
>        }
>      }
>    }
>  }
> 
> assign nref? otherwise repeated calling of this will keep on re-allocating the arrays
> 
> Thanks Graeme
> 
> 
> On 12 Feb 2014, at 10:40, Graeme Winter <graeme.winter at diamond.ac.uk> wrote:
> 
>> All,
>> 
>> By adding 
>> 
>> m_out.adjust_column_array_sizes(len(mi))
>> 
>> to the bpl  wrapper and defining 
>> 
>> m_out.set_n_reflections(len(mi))
>> 
>> in the object.h and bpl wrapper I can do what I want…
>> 
>> I will add some tests and some warnings that this may make nonsense of the values… however before committing any comments on the interface? or behaviour?
>> 
>> Thanks Graeme
>> 
>> 
>> 
>> On 12 Feb 2014, at 09:11, <Graeme.Winter at diamond.ac.uk> <Graeme.Winter at diamond.ac.uk> wrote:
>> 
>>> Hi Folks,
>>> 
>>> I am trying to create a new MTZ file containing unmerged and it seems to be less simple than I would think - set_reals() on a column requires a set of Miller indices and values and does a lookup internally (which I don’t want for unmerged values) and set_values() requires that the array is already the right size - when it starts off as size 0 and I have no idea how to make enough room in there from the Python API…
>>> 
>>> Any clues? I have done quite a chunk of grepping around to try and figure this one out and have run out of ideas…
>>> 
>>> Thanks Graeme_______________________________________________
>>> cctbxbb mailing list
>>> cctbxbb at phenix-online.org
>>> http://phenix-online.org/mailman/listinfo/cctbxbb
>> 
> 
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