[cctbxbb] IPython with cctbx

Ian Rees irees at lbl.gov
Mon Sep 8 14:02:31 PDT 2014


Agreed. This would be a simple and useful thing to add to the builds.

Oliver, it should work fine if you install it into cctbx's python
interpreter. Can you "import IPython" ?

Ian

On Mon, Sep 8, 2014 at 1:58 PM, Oliver Zeldin <zeldin at stanford.edu> wrote:
> Thanks Nat.
>
> I have ipython with my usual python build, yet libtbx.ipython does not
> exist. I've tried libtbx.refresh, and this doesn't give me anything. What
> should I re-configure with libtbx.configure?
>
> If I can get this working I'll create and share an IPython notebook to
> demonstrate a use case for it.
>
> Cheers,
>
> Oli
>
>
> On Mon, Sep 8, 2014 at 1:45 PM, Nathaniel Echols <nechols at lbl.gov> wrote:
>>
>> On Mon, Sep 8, 2014 at 1:19 PM, Oliver Zeldin <zeldin at stanford.edu> wrote:
>>>
>>> Has anyone tried to get IPython working with cctbx?
>>>
>>> I'd really like to be able to use IPython notebooks for
>>> examples/tutorials/documented experiments, and was wondering if anyone else
>>> had thought the same thing.
>>
>>
>> Apparently Ralf did this years ago: if you have IPython installed with the
>> Python that you're using, then re-running the configuration (or
>> libtbx.refresh) will result in a command named "libtbx.ipython" being
>> created.  I confirmed that this does in fact seem to work, although since
>> I've never used Ipython I'm not sure what to expect.
>>
>> If this is something that would be generally useful we could add it to the
>> dependencies build script (and the new improved plus bundles, which I will
>> be sending an email about RSN).
>>
>> -Nat
>>
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>
>
>
> --
> Dr. Oliver B. Zeldin
> Brunger Group
> Stanford University
>
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