[cctbxbb] IPython with cctbx

[Oliver Zeldin]

Here's an example of an IPython notebook for CCTBX:

http://nbviewer.ipython.org/github/zeldebeest/public-notebooks/blob/master/Clustering_basic.ipynb

Basically, it combines a notebook and an interactive python environment.
Awesome times for command-line based analysis sessions, so you can keep
track of everything you do, and easily share your work.



On Mon, Sep 8, 2014 at 2:36 PM, Nathaniel Echols <nechols at lbl.gov> wrote:

> On Mon, Sep 8, 2014 at 2:32 PM, Oliver Zeldin <zeldin at stanford.edu> wrote:
>
>> Now.. can we make it take arguments from the command line? This way we
>> can do things like
>>
>> $libtbx.ipython notebook --matplotib
>>
>> (or whatever)
>>
>> For reference, the default ipython launcher does:
>>
>> import re
>> import sys
>>
>> from IPython import start_ipython
>>
>> if __name__ == '__main__':
>>     sys.argv[0] = re.sub(r'(-script\.pyw|\.exe)?$', '', sys.argv[0])
>>     sys.exit(start_ipython())
>>
>
> Ralf's launcher (libtbx/command_line/ipython_shell_start.py) is from 2007
> and I don't know of anyone else using it, so feel free to modify it if you
> think it could be made more useful.
>
> -Nat
>
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>


-- 
Dr. Oliver B. Zeldin
Brunger Group
Stanford University
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