[cctbxbb] CCTBX.XFEL problems with synchrotron stills

Schulz, Eike-Christian eike.schulz at mpsd.mpg.de
Tue Apr 5 02:17:50 PDT 2016


Hi Pinins,

Thanks for the article - that looks like an interesting tool. However, I don’t think this solves my actual problem … 

Best regards

Eike





On 05/04/16 10:59, "cctbxbb-bounces at phenix-online.org on behalf of pinin" <cctbxbb-bounces at phenix-online.org on behalf of pinins at gmail.com> wrote:

>MAybe this paper can help you to start you processing:
>http://journals.iucr.org/d/issues/2015/05/00/kw5115/stdsup.html
>
>Cheers
>
>2016-04-05 10:55 GMT+02:00 Schulz, Eike-Christian <eike.schulz at mpsd.mpg.de>:
>> Dear all,
>>
>> I am new to serial crystallography and trying to process still images from a synchrotron source (Pilatus 6M detector) using CCTBX. Obviously the process is not glitch-free and I was hoping to get some help here.
>>
>> The indexing routine starts, indexes the images correctly and and produces a log file but no .pickle files are created in the results/000/ directory as described in the wiki entry.
>>
>> I assume that there is a software module that is not properly loaded during the process since I get following error message during indexing:
>>
>> ---------BEGIN Integrate one frame 75 warsaw0048_00075.pickle
>> EFFECTIVE TILING 0 0 2282 2282
>> Indexing error: No module named cxi_user
>>
>>
>> Is there a way to find out if all dependencies are matched ? I suppose CCTBX.XFEL depends on some (specific) python libraries … ?
>>
>> Or am I completely wrong and the error is something different ?
>>
>> With best regards
>>
>> Eike
>>
>>
>>
>>
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>
>
>
>-- 
>Gianluca Santoni, PhD
>
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