[cctbxbb] Mac builds currently broken on Jenkins

Fri Jan 29 07:45:51 PST 2016

Sweet

-Aaron

> On Jan 29, 2016, at 7:15 AM, <markus.gerstel at diamond.ac.uk> wrote:
> 
> Hi Aaron,
>  
> Thanks for your info. This allowed me to narrow it down to an unreliable filesystem*, and the bootstrap script swallowing errors when untarring.
> Fixed both, and new Mac builds are on their way.
>  
> -Markus
>  
> *http://imgur.com/KSy5Gc0
>  
> From: cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix-online.org] On Behalf Of Aaron Brewster
> Sent: 27 January 2016 19:33
> To: cctbx mailing list
> Subject: Re: [cctbxbb] Mac builds currently broken on Jenkins
>  
> Hi Markus, I can't reproduce the error on my mac laptop.
>  
> Here's what I did, in an empty directory with a clean shell:
> python bootstrap.py --builder=cctbx
> python bootstrap.py --builder=dials
>  
> I did cctbx first to see if the error was dials independent, but neither commands had the problem.
>  
> Further, the mac builds on Buildbot are all compiling fine.
>  
> What system is showing the error on your end?
>  
> -Aaron
>  
>  
>  
> On Wed, Jan 27, 2016 at 9:13 AM, <markus.gerstel at diamond.ac.uk> wrote:
> Hello everyone,
>  
> Just a reminder that the MacOSX builds are currently still broken due to an apparently missing msvc.hpp in the boost directory for the build step.
>  
> -Markus
>  
> From: cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix-online.org] On Behalf Of markus.gerstel at diamond.ac.uk
> Sent: 22 January 2016 08:53
> To: cctbxbb at phenix-online.org
> Subject: [cctbxbb] FW: Mac builds currently broken on Jenkins
>  
> Sorry, this should have gone onto cctbx list.
> This is running bootstrap.py --builder=dials build on MacOS X, but I don’t think it is specific to dials.
>  
> -Markus
>  
> From: Gerstel, Markus (DLSLtd,RAL,LSCI) 
> Sent: 22 January 2016 08:51
> To: dials-support at lists.sourceforge.net
> Subject: Mac builds currently broken on Jenkins
>  
> During the build step this happens:
>  
>  
> (..)
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_fix_rad_search.o -c -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions -Wno-array-bounds -DNDEBUG -O3 -ffast-math -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_fix_rad_search.cpp
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/ann/ann_adaptor.cpp:3:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include/annlib_adaptbx/ann_adaptor.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/flex_types.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/accessors/flex_grid.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small_plain.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny_plain.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/detail/misc.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/type_traits.h:29:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits.hpp:13:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/add_const.hpp:16:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/type_trait_def.hpp:14:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/template_arity_spec.hpp:10:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int.hpp:17:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int_fwd.hpp:17:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/adl_barrier.hpp:17:
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/config/adl.hpp:17:10: fatal error: 'boost/mpl/aux_/config/msvc.hpp' file not found
> #include <boost/mpl/aux_/config/msvc.hpp>
>          ^
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_pr_search.o -c -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions -Wno-array-bounds -DNDEBUG -O3 -ffast-math -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_pr_search.cpp
> /usr/bin/c++ -o annlib_adaptbx/self_include/bd_search.o -c -DBOOST_ALL_NO_LIB -fPIC -fno-strict-aliasing -Wno-c++0x-extensions -Wno-array-bounds -DNDEBUG -O3 -ffast-math -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/src -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include -I/Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/build/annlib_adaptbx/include annlib_adaptbx/self_include/bd_search.cpp
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/ann/boost_python/annlib_ext.cpp:2:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/annlib_adaptbx/include/annlib_adaptbx/ann_adaptor.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/flex_types.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/accessors/flex_grid.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/small_plain.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/tiny_plain.h:5:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/detail/misc.h:4:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/cctbx_project/scitbx/array_family/type_traits.h:29:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits.hpp:13:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/add_const.hpp:16:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/type_trait_def.hpp:14:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/type_traits/detail/template_arity_spec.hpp:10:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int.hpp:17:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/int_fwd.hpp:17:
> In file included from /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/adl_barrier.hpp:17:
> /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules/boost/boost/mpl/aux_/config/adl.hpp:17:10: fatal error: 'boost/mpl/aux_/config/msvc.hpp' file not found
> #include <boost/mpl/aux_/config/msvc.hpp>
>          ^
> 1 error generated.
> scons: *** [annlib_adaptbx/ann/ann_adaptor.o] Error 1
> 1 error generated.
> scons: *** [annlib_adaptbx/ann/boost_python/annlib_ext.o] Error 1
> scons: building terminated because of errors.
> usr+sys time: 3.36 seconds, ticks: 13399823, micro-seconds/tick: 0.251
> wall clock time: 15.72 seconds
> Performing actions: build
> ===== Running in .: deleting dist, tests, tmp
>  
>   removing .pyc files in /Users/dlshudson/jenkins_slave/workspace/dials_package_macosx/build_dials/modules
>   removed 3 files
> ===== Running in build: run configure.py
> ===== Running in build: save configure command
> ===== Running in build: libtbx.scons
> Process failed with return code 2
> Build step 'Execute shell' marked build as failure
>  
>  
> -Markus
>  
>  
> 
> -- 
> 
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> Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
> Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
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> Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
> Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
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