[cctbxbb] The curious incident of the test at install time

Graeme.Winter at diamond.ac.uk Graeme.Winter at diamond.ac.uk
Fri May 13 02:50:03 PDT 2016


Markus

I got this error this morning in the regular update / compile shuffle and it's on my to-nag list, also feel like I have seen this before...

Cheerio G

-----Original Message-----
From: cctbxbb-bounces at phenix-online.org [mailto:cctbxbb-bounces at phenix-online.org] On Behalf Of markus.gerstel at diamond.ac.uk
Sent: 13 May 2016 10:47
To: cctbxbb at phenix-online.org
Subject: [cctbxbb] The curious incident of the test at install time

Hi everyone,

we have observed the test cctbx_project/cctbx/regression/tst_grm_pickling.py to be failing, however only on an installation installed from the installer. It appears to run successfully on our bootstrapped developer build.
I presume that the test requires some external data that we do not distribute?

The relevant change occurred between r24437 and r24441, and is almost certainly r24439, which enabled the failing bit of the test.

Stacktrace below.

-Markus


$ libtbx.python /dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/cctbx/regression/tst_grm_pickling.py
Time pickling/unpickling: 0.0187, 0.0097 Traceback (most recent call last):
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/cctbx/regression/tst_grm_pickling.py", line 198, in <module>
    exercise_all(sys.argv[1:])
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/cctbx/regression/tst_grm_pickling.py", line 195, in exercise_all
    test_nucleic_acid(mon_lib_srv, ener_lib)
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/cctbx/regression/tst_grm_pickling.py", line 177, in test_nucleic_acid
    log=null_out())
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 5455, in run
    log=log)
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 5005, in __init__
    restraints_loading_flags=restraints_loading_flags,
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2956, in __init__
    log=log,
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 2343, in __init__
    m_j=mm)
  File "/dls/science/groups/scisoft/DIALS/CD/nightly/dials-dev20160513/modules/cctbx_project/mmtbx/monomer_library/pdb_interpretation.py", line 1568, in get_lib_link
    return mon_lib_srv.link_link_id_dict["rna3p"]
KeyError: 'rna3p'


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