[cctbxbb] failing test with CCP4 7.0.18

richard.gildea at diamond.ac.uk richard.gildea at diamond.ac.uk
Thu Sep 1 06:39:32 PDT 2016


I don't understand exactly what Ralf was testing here, but this test dates from the early days of cctbx (2002) and as far as I am aware hasn't caused any problems until now.

CCP4 update 18 actually appears to be distributing an older version of shelxl than update 14, is this correct? Hopefully the guys at CCP4 can shed some light on what the difference in the shelxl versions they are distributing might be. I don't see any mention of shelxl updates at http://www.ccp4.ac.uk/updates/

$ /dls_sw/apps/ccp4/64/7.0/update14/ccp4-7.0/bin/shelxl

 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 +  SHELXL -  CRYSTAL STRUCTURE REFINEMENT  -   MULTI-CPU VERSION  +
 +  Copyright(C) George M. Sheldrick 1993-2014     Version 2014/7  +
 +                             started at 14:36:05 on 01-Sep-2016  +
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

$ /dls_sw/apps/ccp4/64/7.0/update18/ccp4-7.0/bin/shelxl

 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
 +  SHELXL -  CRYSTAL STRUCTURE REFINEMENT  -   MULTI-CPU VERSION  +
 +  Copyright(C) George M. Sheldrick 1993-2016     Version 2016/4  +
 +                             started at 14:36:42 on 01-Sep-2016  +
 +++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++

Cheers,

Richard


Dr Richard Gildea
Data Analysis Scientist
Tel: +441235 77 8078

Diamond Light Source Ltd.
Diamond House
Harwell Science & Innovation Campus
Didcot
Oxfordshire
OX11 0DE

________________________________________
From: cctbxbb-bounces at phenix-online.org [cctbxbb-bounces at phenix-online.org] on behalf of markus.gerstel at diamond.ac.uk [markus.gerstel at diamond.ac.uk]
Sent: 19 August 2016 10:19
To: cctbxbb at phenix-online.org
Subject: [cctbxbb] failing test with CCP4 7.0.18

Hi,

The test

   libtbx.python $(libtbx.find_in_repositories cctbx/development/run_shelx.py) P31

works with CCP4 7.0.17, but fails when run with SHELXL from CCP4 7.0.18.

The test apparently involves creating a small random crystal structure, calculating the structure factors and solving the structure using SHELXL.
The updated SHELXL version creates deterministic, but slightly different anisotropic temperature factors.
I am not sure if this is a problem with the test or with the SHELXL update.
Could anybody have a look into that?

-Markus

--
This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom


_______________________________________________
cctbxbb mailing list
cctbxbb at phenix-online.org
http://phenix-online.org/mailman/listinfo/cctbxbb



More information about the cctbxbb mailing list