[cctbxbb] bootstrap.py on windows

Thu Apr 6 02:52:34 PDT 2017

Hallo Horst,

I think this is probably a problem that the previous runs of bootstrap failed part way through building Python, and now when you're running it again it is skipping building Python because the base directory exists (and --skip-if-exists is set). However base/bin/python does not exist, so it fails. Perhaps you could try removing the base directory before re-running the script?

Cheers,

Richard

Dr Richard Gildea
Data Analysis Scientist
Tel: +441235 77 8078

Diamond Light Source Ltd.
Diamond House
Harwell Science & Innovation Campus
Didcot
Oxfordshire
OX11 0DE
________________________________
From: cctbxbb-bounces at phenix-online.org [cctbxbb-bounces at phenix-online.org] on behalf of Horst Puschmann [horst.puschmann at gmail.com]
Sent: 06 April 2017 10:44
To: R. D. Oeffner
Cc: cctbxbb at phenix-online.org
Subject: Re: [cctbxbb] bootstrap.py on windows

Hallo Rob,

Richard (Gildea) has figured this out for me -- I was using python 2.7.8 and that's the first part of the problem. I updated to 2.7.13 and the initial issues to do with ssl are solved.

I am still stuck at the end:

  ****************************************************************************
                 Automated CCTBX dependencies build script
                 report problems to cctbx-dev at cci.lbl.gov<mailto:cctbx-dev at cci.lbl.gov>
  ****************************************************************************

Base directory already exists and --skip-if-exists set; exiting.
===== Running in build: run configure.py
Traceback (most recent call last):
  File "bootstrap.py", line 2113, in <module>
    run()
  File "bootstrap.py", line 2108, in run
    enable_shared=options.enable_shared,
  File "bootstrap.py", line 1036, in run
    i.run()
  File "bootstrap.py", line 189, in run
    raise RuntimeError("Could not run %s: File not found" % executable)
RuntimeError: Could not run base\bin\python: File not found

What is it looking for? Please note: this is *not* a development machine.

Greetings
Horst

On 6 April 2017 at 10:17, R. D. Oeffner <rdo20 at cam.ac.uk<mailto:rdo20 at cam.ac.uk>> wrote:
Dear Horst,

I'll look into that. FYI you can also get Windows builds of CCTBX. See email below. You may have to resort using bundles from a few days ago because the two last nightly builds on windows are broken.

Rob

-----Original Message----- From: R. D. Oeffner
Sent: Sunday, March 19, 2017 3:49 PM
To: Billy Poon ; nwmoriarty at lbl.gov<mailto:nwmoriarty at lbl.gov>
Subject: Re: Windows builds for cctbx

There should now be CCTBX builds for Windows in the most recent folders on
http://cci.lbl.gov/cctbx_build . They are just the sources and the build
directory zipped into an archive and does not include an installation
program like the graphical Phenix installer for Windows. Presumably people
wanting to use only CCTBX are sufficiently computer savvy to cope with this.

Rob

--
Robert Oeffner, Ph.D.
Research Associate, The Read Group
Department of Haematology,
Cambridge Institute for Medical Research
University of Cambridge
Cambridge Biomedical Campus
Wellcome Trust/MRC Building
Hills Road
Cambridge CB2 0XY

www.cimr.cam.ac.uk/investigators/read/index.html<http://www.cimr.cam.ac.uk/investigators/read/index.html>
tel: +44(0)1223 763234<tel:%2B44%280%291223%20763234>
mobile: +44(0)7712 887162<tel:%2B44%280%297712%20887162>
-----Original Message----- From: Horst Puschmann
Sent: Thursday, April 6, 2017 9:59 AM
To: cctbxbb at phenix-online.org<mailto:cctbxbb at phenix-online.org>
Subject: [cctbxbb] bootstrap.py on windows

Hello

I am trying to install the cctbx on a Windows 7 64 bit machine using the following bootstrap.py file:

https://raw.githubusercontent.com/cctbx/cctbx_project/master/libtbx/auto_build/bootstrap.py

The script will fail, unless I comment out lines 1101 and 1102:

   #if self.isPlatformWindows():
     #tarurl, arxname, dirpath = MODULES.get_module(module)().get_tarauthenticated(auth=self.get_auth())

If it tries to execute the commented lines, the error will be "KeyError: 'cciuser' in line 590"

After commenting this out, it will fail in line 271, with "AttributeError: 'module' object has no attribute '_create_unverified_context'"

I can get round that with disabling line 247:

     if sys.platform == "win32":

(i.e. change this to       if sys.platform == "xxx":)

After that, things start downloading. All appears well until the same thing happens again in another bootstrap.py file in \modules\cctbx_project\libtbx\auto_build\bootstrap.py

If I disable *that*, it goes further but fails finally with

===== Running in build: run configure.py
Traceback (most recent call last):
 File "bootstrap.py", line 2113, in <module>
   run()
 File "bootstrap.py", line 2108, in run
   enable_shared=options.enable_shared,
 File "bootstrap.py", line 1036, in run
   i.run()
 File "bootstrap.py", line 189, in run
   raise RuntimeError("Could not run %s: File not found" % executable)
RuntimeError: Could not run base\bin\python: File not found

I guess the automatic tests haven't picked this up, because no authentication is needed, maybe?

Greetings
Horst

Virus-free. www.avg.com<http://www.avg.com>

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