[cctbxbb] New error appeared recently, do not know who it belongs to...

[Nicholas Sauter]

that code hasn't changed in 5 years, so how can an error suddenly appear?
Nick

Nicholas K. Sauter, Ph. D.
Senior Scientist, Molecular Biophysics & Integrated Bioimaging Division
Lawrence Berkeley National Laboratory
1 Cyclotron Rd., Bldg. 33R0345
Berkeley, CA 94720
(510) 486-5713

On Sun, Jul 16, 2017 at 10:57 PM, <Graeme.Winter at diamond.ac.uk> wrote:

> Exhibit A:
>
> libtbx.python "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/
> simage/tst.py"
> rstbx.simage.explore_completeness d_min=10
> rstbx.simage.explore_completeness d_min=10 intensity_symmetry=P4
> use_symmetry=True multiprocessing=True
> rstbx.simage.solver d_min=5
> rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=R3:R
> rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=P1
> rstbx.simage.solver d_min=5 lattice_symmetry=P422 intensity_symmetry=P4
> index_and_integrate=True multiprocessing=True
> Traceback (most recent call last):
>   File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/tst.py",
> line 273, in <module>
>     run(args=sys.argv[1:])
>   File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/tst.py",
> line 269, in run
>     exercise_solver()
>   File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/tst.py",
> line 255, in exercise_solver
>     "index_and_integrate=True", "multiprocessing=True"])
>   File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/tst.py",
> line 213, in run
>     command=cmd, stdout_splitlines=False).raise_if_errors().stdout_buffer
>   File "/Users/graeme/svn/cctbx/modules/cctbx_project/libtbx/easy_run.py",
> line 39, in raise_if_errors
>     raise Error(msg)
> RuntimeError: child process stderr output:
>   command: 'rstbx.simage.solver d_min=5 lattice_symmetry=P422
> intensity_symmetry=P4 index_and_integrate=True multiprocessing=True'
>   Traceback (most recent call last):
>     File "/Users/graeme/svn/cctbx/build/../modules/cctbx_
> project/rstbx/command_line/simage.solver.py", line 5, in <module>
>       run(args=sys.argv[1:])
>     File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/solver.py",
> line 1161, in run
>       return run_fresh(args)
>     File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/solver.py",
> line 1145, in run_fresh
>       process(work_params, i_calc)
>     File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/solver.py",
> line 1088, in process
>       process_core(work_params, i_calc.p1_anom, reindexing_assistant,
> image_mdls)
>     File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/solver.py",
> line 985, in process_core
>       work_params, reindexing_assistant, image_mdls, usables)
>     File "/Users/graeme/svn/cctbx/modules/cctbx_project/rstbx/simage/solver.py",
> line 883, in build_image_cluster
>       raise RuntimeError("Insufficient connectivity between images.")
>   RuntimeError: Insufficient connectivity between images.
> usr+sys time: 0.78 seconds, ticks: 777467, micro-seconds/tick: 1.003
> wall clock time: 6.99 seconds
>
> OS X & RHEL6
>
> Any volunteers?
>
> Cheers Graeme
>
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