[cctbxbb] smtbx.refine not working correctly?

Graeme.Winter at diamond.ac.uk Graeme.Winter at diamond.ac.uk
Wed Jul 19 23:16:49 PDT 2017


Not sure who to ask...

Tried smtbx.refine from latest phenix & dials builds, both give


[gw56 at cs03r-sc-serv-16 Refine]$ smtbx.refine lcy.ins lcy.hkl lcy_smtbx.res

Traceback (most recent call last):

  File "/dls_sw/apps/dials/dials-v1-6-4/build/../modules/cctbx_project/smtbx/command_line/refine.py", line 152, in <module>

    run(args, options)

  File "/dls_sw/apps/dials/dials-v1-6-4/build/../modules/cctbx_project/smtbx/command_line/refine.py", line 67, in run

    strictly_shelxl=False)

  File "/dls_sw/apps/dials/dials-v1-6-4/modules/cctbx_project/smtbx/refinement/__init__.py", line 10, in from_shelx

    return _(cls, *args, **kwds)

  File "/dls_sw/apps/dials/dials-v1-6-4/modules/cctbx_project/iotbx/shelx/__init__.py", line 59, in smtbx_refinement_model_from

    builder.weighting_scheme,

AttributeError: 'smtbx_builder' object has no attribute 'weighting_scheme'

[gw56 at cs03r-sc-serv-16 Refine]$ module load phenix/1.12

Setting up phenix environment and PATH...

[gw56 at cs03r-sc-serv-16 Refine]$ smtbx.refine lcy.ins lcy.hkl lcy_smtbx.res

Traceback (most recent call last):

  File "/dls_sw/apps/phenix/1.12/phenix-1.12-2829/build/../modules/cctbx_project/smtbx/command_line/refine.py", line 152, in <module>

    run(args, options)

  File "/dls_sw/apps/phenix/1.12/phenix-1.12-2829/build/../modules/cctbx_project/smtbx/command_line/refine.py", line 67, in run

    strictly_shelxl=False)

  File "/dls_sw/apps/phenix/1.12/phenix-1.12-2829/modules/cctbx_project/smtbx/refinement/__init__.py", line 10, in from_shelx

    return _(cls, *args, **kwds)

  File "/dls_sw/apps/phenix/1.12/phenix-1.12-2829/modules/cctbx_project/iotbx/shelx/__init__.py", line 59, in smtbx_refinement_model_from

    builder.weighting_scheme,

AttributeError: 'smtbx_builder' object has no attribute 'weighting_scheme'

who's best to ask about this?

Thanks Graeme

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