[cctbxbb] simtbx

Graeme.Winter at diamond.ac.uk Graeme.Winter at diamond.ac.uk
Wed May 3 07:55:21 PDT 2017


Nick

Fine, so long as not configured by default otherwise can take out cctbx builds as a side effect (as happened earlier)

Best wishes Graeme

From: Nicholas Sauter [mailto:nksauter at lbl.gov]
Sent: 03 May 2017 15:52
To: cctbx mailing list
Cc: Winter, Graeme (DLSLtd,RAL,LSCI)
Subject: Re: [cctbxbb] simtbx

Markus,

We want option c.  simtbx should be in the cctbx_project directory.  No separate git repository.  We need to double check we've gotten all the files in cctbx_project, then remove them from the separate repo.  James, could you look into this?

Nick

Nicholas K. Sauter, Ph. D.
Senior Scientist, Molecular Biophysics & Integrated Bioimaging Division
Lawrence Berkeley National Laboratory
1 Cyclotron Rd., Bldg. 33R0345
Berkeley, CA 94720
(510) 486-5713

On Wed, May 3, 2017 at 7:49 AM, <markus.gerstel at diamond.ac.uk<mailto:markus.gerstel at diamond.ac.uk>> wrote:
Hi James,

It looks that you now have two separate places where simtbx code is kept. One is in the simtbx repository, where you fixed the sign earlier, and the other one is in the cctbx repository, where you just now fixed it again.
Simtbx repo: https://github.com/dials/simtbx
Simtbx folder in cctbx repo: https://github.com/cctbx/cctbx_project/tree/master/simtbx

I guess suppose there are three options here:

a.       move simtbx into the module directory, add simtbx to the bootstrap script so it is initialised correctly.

b.       leave simtbx inside the cctbx_project directory and repository, but as its own git repository (using git submodule)

c.       leave simtbx inside the cctbx_project directory, delete the separate git repository

NB: This issue is independent of resolving the dials-dependency issue.

-Markus

From: cctbxbb-bounces at phenix-online.org<mailto:cctbxbb-bounces at phenix-online.org> [mailto:cctbxbb-bounces at phenix-online.org<mailto:cctbxbb-bounces at phenix-online.org>] On Behalf Of James Holton
Sent: 03 May 2017 15:40
To: Winter, Graeme (DLSLtd,RAL,LSCI) <Graeme.Winter at Diamond.ac.uk<mailto:Graeme.Winter at Diamond.ac.uk>>; cctbxbb at phenix-online.org<mailto:cctbxbb at phenix-online.org>
Subject: Re: [cctbxbb] simtbx


Yesterday, Aaron and I were trying to set things up so that simtbx would be available to people who aren't James Holton.  It's been checked in and working for over a month now, and only a few days ago I discovered that a fresh "bootstrap" has a broken simtbx, despite my "git status" telling me all my files are up to date.  I asked Aaron and Nick for help with this.

  I thought what we did was make cctbx.xfel depends on simtbx, since fitting simulations to stills is the whole reason for porting my stuff into python.

I set up simtbx with a constructor that takes a dxtbx detector as input, but does that make it depend on dials?  I did not expect that.

Sorry, didn't mean to break anything!  Would much appreciate any help on this.

-James
On 5/3/2017 1:41 AM, Graeme.Winter at Diamond.ac.uk<mailto:Graeme.Winter at Diamond.ac.uk> wrote:
Hi Folks

We have noticed that simtbx, part of the core cctbx now, depends on dials

This means if you do not have a dials build your cctbx will be broken

This is probably not the way we want things?

I thought simtbx was a separate repo?

Cheerio Graeme



--

This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom





--

This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom


_______________________________________________
cctbxbb mailing list
cctbxbb at phenix-online.org<mailto:cctbxbb at phenix-online.org>
http://phenix-online.org/mailman/listinfo/cctbxbb

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/cctbxbb/attachments/20170503/e93fa721/attachment-0001.htm>


More information about the cctbxbb mailing list