[cctbxbb] cctbx versions causing indentation crash?

Magnus Andersson magnus.andersson at scilifelab.se
Thu Nov 9 12:15:16 PST 2017


Hi all,

I have a script that runs fine on my old computer, but crashes on my new computer with the error message:

IndentationError: unexpected indent

This script is (amongst other things) calling the softwatre Coot such as:

subprocess.call(["""coot --no-graphics<<end/n
              (handle-read-draw-molecule-with-recentre \""""+str(inf)+"""\" 1)
              (set-refinement-immediate-replacement 1)
              (set-refine-max-residues 40)
              (regularize-zone 0 \" \"  """+str(res1-2)+""" """+str(res3)+"""\" \")
              (accept-regularizement)
              (regularize-zone 0 \" \"  """+str(res3)+""" """+str(res2+2)+"""\" \")
              (accept-regularizement)
              (write-pdb-file 0 \""""+str(outf)+"""\")
              (coot-real-exit 0)"""], shell=True)

which is ok on my old system. I am trying to find the most likely source of this error. Here are the differences:

- OLD cctbx = uses Python 2.7.10, NEW cctbx 2.7.14
- OLD OSX = 10.10.5 (i.e. Yosemite), NEW OSX = 10.11.5 (i.e. El Capitan)
- OLD Coot = vers 0.8, NEW Coot = vers 0.8.8 [old Coot install was from Fink but this shouldn’t matter I think]

Perhaps someone has encountered something similar or has an educated guess on whether different cctbx versions can cause such errors?

Thanks,

Magnus



####
Magnus Andersson, Docent, Ph.D.

Email: magnus.andersson at scilifelab.se
Phone: 0769469872

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Science For Life Laboratory
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Box 1031
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