[cctbxbb] cannot compile Phenix

Pavel Afonine pafonine at lbl.gov
Sat Apr 6 11:16:51 PDT 2019


Oh, thanks Rob! Now trying from scratch in an empty folder! Let's see 
how it goes!
Pavel

On 4/6/19 11:15, R. D. Oeffner wrote:
> From the messages on the cctbx github mailing list it seems that Dials 
> people have been extricating dxtbx from cctbx_project.
>
> Rob
>
> -----Original Message----- From: Pavel Afonine
> Sent: Saturday, April 6, 2019 7:07 PM
> To: phenixdev
> Subject: cannot compile Phenix
>
> Hi,
>
> anyone knows why current Phenix code is broken:
>
> python bootstrap.py --builder=phenix --sfuser=afonine --cciuser=afonine
> update
> python bootstrap.py --builder=phenix --sfuser=afonine --cciuser=afonine
> build --nproc=12
>
> leads to
>
> (...)
> AttributeError: 'empty' object has no attribute 'dxtbx_include':
>   File "/Users/pafonine/phenix/build/SConstruct", line 31:
>     SConscript("spotfinder/SConscript")
>   File
> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py",
> line 607:
>     return method(*args, **kw)
>   File
> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py",
> line 544:
>     return _SConscript(self.fs, *files, **subst_kw)
>   File
> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py",
> line 253:
>     call_stack[-1].globals)
>   File
> "/Users/pafonine/phenix/modules/cctbx_project/spotfinder/SConscript",
> line 22:
>     env_etc.dxtbx_include,
> usr+sys time: 1.94 seconds
> wall clock time: 4.51 seconds
> Process failed with return code 2
>
> Any idea for a workaround?
>
> Pavel
>
>
>
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