[cctbxbb] cannot compile Phenix

[Pavel Afonine]

Adding --use-conda seems to make it work:

python bootstrap.py --builder=phenix --cciuser=afonine --use-conda

Pavel

On 4/6/19 11:39, Pavel Afonine wrote:
> No luck.. Running
>
> python bootstrap.py --builder=phenix --cciuser=afonine
>
> in an empty directory results in another crash:
>
> Installing OpenSSL...
>   log file is /Users/pafonine/phenix/base_tmp/OpenSSL_install_log
>   getting package openssl-1.0.2r.tar.gz...
>     downloading from 
> https://gitcdn.link/repo/dials/dependencies/master/ : Traceback (most 
> recent call last):
>   File 
> "modules/cctbx_project/libtbx/auto_build/install_base_packages.py", 
> line 1674, in <module>
>     installer(args=sys.argv, log=sys.stdout)
>   File 
> "modules/cctbx_project/libtbx/auto_build/install_base_packages.py", 
> line 250, in __init__
>     self.build_dependencies(packages=packages)
>   File 
> "modules/cctbx_project/libtbx/auto_build/install_base_packages.py", 
> line 774, in build_dependencies
>     getattr(self, 'build_%s'%i)()
>   File 
> "modules/cctbx_project/libtbx/auto_build/install_base_packages.py", 
> line 1228, in build_openssl
>     pkg = self.fetch_package(pkg_name=pkg_name, pkg_url=pkg_url)
>   File 
> "/Users/pafonine/phenix/modules/cctbx_project/libtbx/auto_build/package_defs.py", 
> line 240, in __call__
>     size = self.toolbox.download_to_file(full_url, output_file, 
> log=self.log)
>   File 
> "/Users/pafonine/phenix/modules/cctbx_project/libtbx/auto_build/bootstrap.py", 
> line 265, in download_to_file
>     socket = urllib2.urlopen(url_request)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 154, in urlopen
>     return opener.open(url, data, timeout)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 437, in open
>     response = meth(req, response)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 550, in http_response
>     'http', request, response, code, msg, hdrs)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 475, in error
>     return self._call_chain(*args)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 409, in _call_chain
>     result = func(*args)
>   File 
> "/System/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/urllib2.py", 
> line 558, in http_error_default
>     raise HTTPError(req.get_full_url(), code, msg, hdrs, fp)
> urllib2.HTTPError: HTTP Error 500: Internal Server Error
> Process failed with return code 1
>
> Pavel
>
> P.S.: Are we really ready for Phenix release?
>
>
> On 4/6/19 11:16, Pavel Afonine wrote:
>> Oh, thanks Rob! Now trying from scratch in an empty folder! Let's see 
>> how it goes!
>> Pavel
>>
>> On 4/6/19 11:15, R. D. Oeffner wrote:
>>> From the messages on the cctbx github mailing list it seems that 
>>> Dials people have been extricating dxtbx from cctbx_project.
>>>
>>> Rob
>>>
>>> -----Original Message----- From: Pavel Afonine
>>> Sent: Saturday, April 6, 2019 7:07 PM
>>> To: phenixdev
>>> Subject: cannot compile Phenix
>>>
>>> Hi,
>>>
>>> anyone knows why current Phenix code is broken:
>>>
>>> python bootstrap.py --builder=phenix --sfuser=afonine --cciuser=afonine
>>> update
>>> python bootstrap.py --builder=phenix --sfuser=afonine --cciuser=afonine
>>> build --nproc=12
>>>
>>> leads to
>>>
>>> (...)
>>> AttributeError: 'empty' object has no attribute 'dxtbx_include':
>>>   File "/Users/pafonine/phenix/build/SConstruct", line 31:
>>>     SConscript("spotfinder/SConscript")
>>>   File
>>> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py", 
>>>
>>> line 607:
>>>     return method(*args, **kw)
>>>   File
>>> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py", 
>>>
>>> line 544:
>>>     return _SConscript(self.fs, *files, **subst_kw)
>>>   File
>>> "/Users/pafonine/phenix/modules/scons/engine/SCons/Script/SConscript.py", 
>>>
>>> line 253:
>>>     call_stack[-1].globals)
>>>   File
>>> "/Users/pafonine/phenix/modules/cctbx_project/spotfinder/SConscript",
>>> line 22:
>>>     env_etc.dxtbx_include,
>>> usr+sys time: 1.94 seconds
>>> wall clock time: 4.51 seconds
>>> Process failed with return code 2
>>>
>>> Any idea for a workaround?
>>>
>>> Pavel
>>>
>>>
>>>
>>> ---
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>>> https://www.avg.com
>>>
>>
>