[cctbxbb] Booststrap fails: zlib.h missing on Mojave with Xcode 10.3

Luc Bourhis luc_j_bourhis at mac.com
Tue Aug 13 06:58:32 PDT 2019


I see a message should have been printed to advise me to do that but it was not. Buffering maybe? In any case, yes, it helps! 
Sorry, I missed that closed issue…

> On 13 Aug 2019, at 15:40, richard.gildea at diamond.ac.uk wrote:
> 
> Hi Luc,
> 
> 
> Does this help? https://github.com/cctbx/cctbx_project/issues/333 <https://github.com/cctbx/cctbx_project/issues/333>
> 
> 
> I.e. have you also run:
> 
> 
> sudo installer -pkg /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_macOS_10.14.pkg -target /
> 
> 
> See also: https://github.com/cctbx/cctbx_project/issues/240 <https://github.com/cctbx/cctbx_project/issues/240> and https://github.com/cctbx/cctbx_project/pull/334 <https://github.com/cctbx/cctbx_project/pull/334>
> 
> 
> Cheers,
> 
> 
> Richard
> 
> 
> Dr Richard Gildea
> Data Analysis Scientist
> Tel: +441235 77 8078
> 
> Diamond Light Source Ltd.
> Diamond House
> Harwell Science & Innovation Campus
> Didcot
> Oxfordshire
> OX11 0DE
> ________________________________
> From: cctbxbb-bounces at phenix-online.org <mailto:cctbxbb-bounces at phenix-online.org> <cctbxbb-bounces at phenix-online.org <mailto:cctbxbb-bounces at phenix-online.org>> on behalf of Luc Bourhis <luc_j_bourhis at mac.com <mailto:luc_j_bourhis at mac.com>>
> Sent: 13 August 2019 14:28:05
> To: cctbx mailing list
> Subject: [cctbxbb] Booststrap fails: zlib.h missing on Mojave with Xcode 10.3
> 
> Hi,
> 
> I am trying to setup a Python 3 cctbx. I did
> 
> python bootstrap.py --git-ssh --python3 --builder cctbxlite
> 
> But it fails at the installation of OpenSSL. Clang version is "Apple LLVM version 10.0.1 (clang-1001.0.46.4)”. I attached the OpenSSL install log but I don’t see any error in it. And the advice to run xcode-select is bogus: I have it already setup.
> Best wishes,
> 
> Luc
> 
> Installing OpenSSL...
>  log file is /Users/luc/Developer/cctbx/base_tmp/OpenSSL_install_log
>  getting package openssl-1.0.2r.tar.gz...
>    downloading from https://gitcdn.link/repo/dials/dependencies/master/openssl-1.0.2r.tar.gz : 5223 kB
>  installing openssl-1.0.2r.tar.gz...
>  package openssl took 219.5s to install
> 
> --------------------------------------------------------------------------------
> 
> zlib.h missing -- try running 'xcode-select --install' first
> Process failed with return code 1
> 
> 
> 
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