[cctbxbb] Azure pipelines Linux builds failing with segmentation fault

[Billy Poon]

Hi Richard,

I'm seeing this on some forks as well, and this only started a few days
ago, so I'll try to debug this week or next.

--
Billy K. Poon
Research Scientist, Molecular Biophysics and Integrated Bioimaging
Lawrence Berkeley National Laboratory
1 Cyclotron Road, M/S 33R0345
Berkeley, CA 94720
Tel: (510) 486-5709
Fax: (510) 486-5909
Web: https://phenix-online.org


On Wed, Jul 31, 2019 at 8:10 AM richard.gildea at diamond.ac.uk <
richard.gildea at diamond.ac.uk> wrote:

> Recent Azure builds are failing for the Linux builds with the following
> error:
>
>
> ##[section]Starting: Test
>
> ==============================================================================
> Task : Command line
> Description : Run a command line script using Bash on Linux and macOS and
> cmd.exe on Windows
> Version : 2.151.2
> Author : Microsoft Corporation
> Help :
> https://docs.microsoft.com/azure/devops/pipelines/tasks/utility/command-line
>
> ==============================================================================
> Generating script.
> ========================== Starting Command Output
> ===========================
> [command]/bin/bash --noprofile --norc
> /__w/_temp/823d09b8-e953-4f93-a9a8-0d863a25f1ce.sh
> /__w/_temp/823d09b8-e953-4f93-a9a8-0d863a25f1ce.sh: line 11: 6307
> Segmentation fault (core dumped) libtbx.run_tests_parallel
> module=boost_adaptbx module=cctbx module=cma_es module=fable module=gltbx
> module=iotbx module=libtbx module=rstbx module=scitbx module=simtbx
> module=smtbx module=spotfinder module=annlib_adaptbx module=cbflib_adaptbx
> nproc=4
> ##[error]Bash exited with code '139'.
> ##[section]Finishing: Test
>
>
> https://dev.azure.com/cctbx/cctbx_project/_build/results?buildId=256
>
>
> The last successful Linux Python 2.7 master build was
> https://dev.azure.com/cctbx/cctbx_project/_build/results?buildId=240
>
>
> The first failing Linux Python 2.7 master build was
> https://dev.azure.com/cctbx/cctbx_project/_build/results?buildId=245
>
>
> Mac builds appear to be fine. Does anyone have any idea what is the issue?
>
>
> Cheers,
>
>
> Richard
>
>
> Dr Richard Gildea
> Data Analysis Scientist
> Tel: +441235 77 8078
>
> Diamond Light Source Ltd.
> Diamond House
> Harwell Science & Innovation Campus
> Didcot
> Oxfordshire
> OX11 0DE
>
> --
> This e-mail and any attachments may contain confidential, copyright and or
> privileged material, and are for the use of the intended addressee only. If
> you are not the intended addressee or an authorised recipient of the
> addressee please notify us of receipt by returning the e-mail and do not
> use, copy, retain, distribute or disclose the information in or attached to
> the e-mail.
> Any opinions expressed within this e-mail are those of the individual and
> not necessarily of Diamond Light Source Ltd.
> Diamond Light Source Ltd. cannot guarantee that this e-mail or any
> attachments are free from viruses and we cannot accept liability for any
> damage which you may sustain as a result of software viruses which may be
> transmitted in or with the message.
> Diamond Light Source Limited (company no. 4375679). Registered in England
> and Wales with its registered office at Diamond House, Harwell Science and
> Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom
>
>
> _______________________________________________
> cctbxbb mailing list
> cctbxbb at phenix-online.org
> http://phenix-online.org/mailman/listinfo/cctbxbb
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://phenix-online.org/pipermail/cctbxbb/attachments/20190731/43a5b642/attachment.htm>