<html><head><meta http-equiv="Content-Type" content="text/html charset=windows-1252"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;"><br><div><div>On 4 Jun 2014, at 15:18, Magnus Andersson <<a href="mailto:magnus.andersson@scilifelab.se">magnus.andersson@scilifelab.se</a>> wrote:</div><br class="Apple-interchange-newline"><blockquote type="cite"><meta http-equiv="Content-Type" content="text/html charset=windows-1252"><div style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;">Ok, now I'm getting a little further at least.<div><br></div><div>But is encounter a new error message, which I don�t understand:</div><div><br></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);">import iotbx.pdb</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/iotbx/pdb/__init__.py", line 2, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> from cctbx.array_family import flex</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/cctbx/array_family/flex.py", line 2, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> import scitbx.array_family.flex</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/scitbx/array_family/flex.py", line 2, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> import boost.optional # import dependency</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/optional.py", line 2, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> import boost.python</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 129, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> floating_point_exceptions = floating_point_exceptions()</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/boost_adaptbx/boost/python.py", line 122, in floating_point_exceptions</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> import libtbx.load_env</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/libtbx/load_env.py", line 5, in <module></div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> libtbx.env = libtbx.env_config.unpickle()</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2194, in unpickle</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> set_preferred_sys_prefix_and_sys_executable(build_path=build_path)</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/Users/magnus/Downloads/cctbx_sources/libtbx/env_config.py", line 2110, in set_preferred_sys_prefix_and_sys_executable</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> if (op.samefile(build_path, dirname)):</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> File "/opt/local/Library/Frameworks/Python.framework/Versions/2.7/lib/python2.7/posixpath.py", line 162, in samefile</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);"> s1 = os.stat(f1)</div><div style="margin: 0px; font-size: 11px; font-family: Menlo; color: rgb(255, 255, 255); background-color: rgb(44, 103, 200);">OSError: [Errno 2] No such file or directory: ''</div></div></blockquote><br></div><div>Are you sure LIBTBX_BUILD is set in your environment?</div><div><br></div><div>Luc</div><div><br></div><br></body></html>