<html xmlns:v="urn:schemas-microsoft-com:vml" xmlns:o="urn:schemas-microsoft-com:office:office" xmlns:w="urn:schemas-microsoft-com:office:word" xmlns:m="http://schemas.microsoft.com/office/2004/12/omml" xmlns="http://www.w3.org/TR/REC-html40">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8">
<meta name="Generator" content="Microsoft Word 14 (filtered medium)">
<style><!--
/* Font Definitions */
@font-face
{font-family:Wingdings;
panose-1:5 0 0 0 0 0 0 0 0 0;}
@font-face
{font-family:Wingdings;
panose-1:5 0 0 0 0 0 0 0 0 0;}
@font-face
{font-family:Calibri;
panose-1:2 15 5 2 2 2 4 3 2 4;}
@font-face
{font-family:Tahoma;
panose-1:2 11 6 4 3 5 4 4 2 4;}
/* Style Definitions */
p.MsoNormal, li.MsoNormal, div.MsoNormal
{margin:0cm;
margin-bottom:.0001pt;
font-size:12.0pt;
font-family:"Times New Roman","serif";}
a:link, span.MsoHyperlink
{mso-style-priority:99;
color:blue;
text-decoration:underline;}
a:visited, span.MsoHyperlinkFollowed
{mso-style-priority:99;
color:purple;
text-decoration:underline;}
p.MsoAcetate, li.MsoAcetate, div.MsoAcetate
{mso-style-priority:99;
mso-style-link:"Balloon Text Char";
margin:0cm;
margin-bottom:.0001pt;
font-size:8.0pt;
font-family:"Tahoma","sans-serif";}
span.EmailStyle17
{mso-style-type:personal-reply;
font-family:"Calibri","sans-serif";
color:#1F497D;}
span.BalloonTextChar
{mso-style-name:"Balloon Text Char";
mso-style-priority:99;
mso-style-link:"Balloon Text";
font-family:"Tahoma","sans-serif";
mso-fareast-language:EN-GB;}
.MsoChpDefault
{mso-style-type:export-only;
font-family:"Calibri","sans-serif";
mso-fareast-language:EN-US;}
@page WordSection1
{size:612.0pt 792.0pt;
margin:72.0pt 72.0pt 72.0pt 72.0pt;}
div.WordSection1
{page:WordSection1;}
--></style><!--[if gte mso 9]><xml>
<o:shapedefaults v:ext="edit" spidmax="1026" />
</xml><![endif]--><!--[if gte mso 9]><xml>
<o:shapelayout v:ext="edit">
<o:idmap v:ext="edit" data="1" />
</o:shapelayout></xml><![endif]-->
</head>
<body lang="EN-GB" link="blue" vlink="purple">
<div class="WordSection1">
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">HI Billy<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">All sounds good and I certainly approve of the forward looking to 2020
</span><span style="font-size:11.0pt;font-family:Wingdings;color:#1F497D">J</span><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">I wonder, could you tell me what revision of dials you have in phenix 1.11? For our debugging purposes it is useful to know<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D">Thanks Graeme<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-size:11.0pt;font-family:"Calibri","sans-serif";color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif"">From:</span></b><span lang="EN-US" style="font-size:10.0pt;font-family:"Tahoma","sans-serif""> cctbxbb-bounces@phenix-online.org [mailto:cctbxbb-bounces@phenix-online.org]
<b>On Behalf Of </b>Billy Poon<br>
<b>Sent:</b> 12 October 2016 21:46<br>
<b>To:</b> cctbx mailing list<br>
<b>Subject:</b> Re: [cctbxbb] Monthly "how far are we from moving to git" message<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">Hi Graeme and Markus,<o:p></o:p></p>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Yes, we have a release ready and we're just waiting a week to see if any major bugs arise before we officially announce it. Barring any major issues, we will follow up with you next week about the migration to git.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">As for upgrades, I'm fine with going to 2.7.12, but we'd have to test everything before committing the change. Also, I was going to update numpy and migrate PIL to Pillow. There are some API changes going from PIL to Pillow and I think
I had some issues with numpy, which is why they were not upgraded with the other packages. And since I have virtual machines already set up, testing should be faster.<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
<div>
<p class="MsoNormal">Also, I'm looking into revamping the Phenix GUI in preparation for a migration to Python 3 in 2020 (Python 2 support ends in 2020). Since there is a lot of basic code that need to be rewritten for the GUI, I'm starting to prepare now. Are
there any issues with moving to Python 3 in a few years? I think Boost should support Python 3, but I have not personally tested it.<o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal"><br clear="all">
<o:p></o:p></p>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<div>
<p class="MsoNormal">--<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal"><span style="font-size:9.5pt">Billy K. Poon</span><o:p></o:p></p>
</div>
</div>
<div>
<p class="MsoNormal">Research Scientist, Molecular Biophysics and Integrated Bioimaging<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Lawrence Berkeley National Laboratory<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">1 Cyclotron Road, M/S 33R0345<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Berkeley, CA 94720<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Tel: (510) 486-5709<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Fax: (510) 486-5909<o:p></o:p></p>
</div>
<div>
<p class="MsoNormal">Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a><o:p></o:p></p>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
<div>
<p class="MsoNormal">On Wed, Oct 12, 2016 at 5:59 AM, <<a href="mailto:markus.gerstel@diamond.ac.uk" target="_blank">markus.gerstel@diamond.ac.uk</a>> wrote:<o:p></o:p></p>
<p class="MsoNormal">Hi,<br>
<br>
Looking at <a href="https://www.phenix-online.org/download/nightly_builds.cgi" target="_blank">
https://www.phenix-online.org/download/nightly_builds.cgi</a> there is now a 1.11 build without 'rc' suffix available. Are we now in the one week cooling off period?<br>
Will revive the move-to-git-schedule once we know more on this...<br>
<br>
As one of the first post-phenix-release changes I would like to upgrade bootstrap from installing python 2.7.8 to python >=2.7.9. For obvious reasons I would suggest going directly to the current stable 2.7.12.<br>
Are there any concerns regarding this?<br>
<br>
-Markus<br>
<br>
________________________________<br>
From: <a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-online.org</a> [<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-online.org</a>] on behalf of
<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.ac.uk</a> [<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.ac.uk</a>]<br>
Sent: Friday, October 07, 2016 14:07<br>
To: <a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.org</a><br>
Subject: [cctbxbb] Monthly "how far are we from moving to git" message<br>
<br>
Good afternoon / morning / evening (depending on your locale)<br>
<br>
I’m just running a bootstrap build and having to check out the whole of cctbx one … file … at … a … time from svn & it reminded me we were going to move over to git at some point – ISTR was determined by the PHENIX release.<br>
<br>
Just wondering how this is going & how long it is likely to be until we can get this ball rolling :)<br>
<br>
Thanks & best wishes Graeme<br>
<br>
<br>
<br>
--<br>
<br>
This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt
by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.<br>
Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd.<br>
Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.<br>
Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom<br>
<br>
<br>
_______________________________________________<br>
cctbxbb mailing list<br>
<a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.org</a><br>
<a href="http://phenix-online.org/mailman/listinfo/cctbxbb" target="_blank">http://phenix-online.org/mailman/listinfo/cctbxbb</a><o:p></o:p></p>
</div>
<p class="MsoNormal"><o:p> </o:p></p>
</div>
</div>
<p align="justify"> </p>
<p align="justify">-- </p>
<p align="justify">This e-mail and any attachments may contain confidential, copyright and or privileged material, and are for the use of the intended addressee only. If you are not the intended addressee or an authorised recipient of the addressee please notify us of receipt by returning the e-mail and do not use, copy, retain, distribute or disclose the information in or attached to the e-mail.<br />Any opinions expressed within this e-mail are those of the individual and not necessarily of Diamond Light Source Ltd. <br />Diamond Light Source Ltd. cannot guarantee that this e-mail or any attachments are free from viruses and we cannot accept liability for any damage which you may sustain as a result of software viruses which may be transmitted in or with the message.<br />Diamond Light Source Limited (company no. 4375679). Registered in England and Wales with its registered office at Diamond House, Harwell Science and Innovation Campus, Didcot, Oxfordshire, OX11 0DE, United Kingdom<br /> </p></body>
</html>