<div dir="ltr">Hi Graeme and Markus,<div><br></div><div>We're still testing the release, so the announcement will come out probably next week.</div><div><br></div><div>Also, <a href="http://github.com">github.com</a> is currently down due to the DDOS attack on our East Coast.</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div dir="ltr"><div dir="ltr"><div><div>--</div><div><span style="font-size:12.8000001907349px">Billy K. Poon</span><br></div></div><div>Research Scientist, Molecular Biophysics and Integrated Bioimaging</div><div>Lawrence Berkeley National Laboratory</div><div>1 Cyclotron Road, M/S 33R0345</div><div>Berkeley, CA 94720</div><div>Tel: (510) 486-5709</div><div>Fax: (510) 486-5909</div><div>Web: <a href="https://phenix-online.org" target="_blank">https://phenix-online.org</a></div></div></div></div></div></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Fri, Oct 14, 2016 at 11:56 PM, <span dir="ltr"><<a href="mailto:Graeme.Winter@diamond.ac.uk" target="_blank">Graeme.Winter@diamond.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Billy<br>
<br>
Thinking about it, it may be worth making a proper release to coincide with this (and also for CCP4, who asked recently too…)<br>
<br>
Will follow up internally<br>
<br>
Best wishes Graeme<br>
<span class=""><br>
On 13 Oct 2016, at 18:07, Billy Poon <<a href="mailto:bkpoon@lbl.gov">bkpoon@lbl.gov</a><mailto:<a href="mailto:bkpoon@lbl.gov">bkpoon@<wbr>lbl.gov</a>>> wrote:<br>
<br>
Hi Graeme,<br>
<br>
For dials, buildbot downloads the latest source from github and uses that. So for the currently available Phenix build, we are using the source from last night (10/12). Should we use the latest stable release for the official Phenix release?<br>
<br>
--<br>
Billy K. Poon<br>
Research Scientist, Molecular Biophysics and Integrated Bioimaging<br>
Lawrence Berkeley National Laboratory<br>
1 Cyclotron Road, M/S 33R0345<br>
Berkeley, CA 94720<br>
Tel: <a href="tel:%28510%29%20486-5709" value="+15104865709">(510) 486-5709</a><br>
Fax: <a href="tel:%28510%29%20486-5909" value="+15104865909">(510) 486-5909</a><br>
</span>Web: <a href="https://phenix-online.org" rel="noreferrer" target="_blank">https://phenix-online.org</a><<a href="https://phenix-online.org/" rel="noreferrer" target="_blank">http<wbr>s://phenix-online.org/</a>><br>
<span class=""><br>
On Thu, Oct 13, 2016 at 2:03 AM, <<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.ac.uk</a><<wbr>mailto:<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.<wbr>ac.uk</a>>> wrote:<br>
HI Billy<br>
<br>
</span>All sounds good and I certainly approve of the forward looking to 2020 ☺<br>
<span class=""><br>
I wonder, could you tell me what revision of dials you have in phenix 1.11? For our debugging purposes it is useful to know<br>
<br>
Thanks Graeme<br>
<br>
</span>From: <a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-online.<wbr>org</a><mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@<wbr>phenix-online.org</a>> [mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@<wbr>phenix-online.org</a><mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbx<wbr>bb-bounces@phenix-online.org</a>>] On Behalf Of Billy Poon<br>
<span class="">Sent: 12 October 2016 21:46<br>
To: cctbx mailing list<br>
Subject: Re: [cctbxbb] Monthly "how far are we from moving to git" message<br>
<br>
Hi Graeme and Markus,<br>
<br>
Yes, we have a release ready and we're just waiting a week to see if any major bugs arise before we officially announce it. Barring any major issues, we will follow up with you next week about the migration to git.<br>
<br>
As for upgrades, I'm fine with going to 2.7.12, but we'd have to test everything before committing the change. Also, I was going to update numpy and migrate PIL to Pillow. There are some API changes going from PIL to Pillow and I think I had some issues with numpy, which is why they were not upgraded with the other packages. And since I have virtual machines already set up, testing should be faster.<br>
<br>
Also, I'm looking into revamping the Phenix GUI in preparation for a migration to Python 3 in 2020 (Python 2 support ends in 2020). Since there is a lot of basic code that need to be rewritten for the GUI, I'm starting to prepare now. Are there any issues with moving to Python 3 in a few years? I think Boost should support Python 3, but I have not personally tested it.<br>
<br>
--<br>
Billy K. Poon<br>
Research Scientist, Molecular Biophysics and Integrated Bioimaging<br>
Lawrence Berkeley National Laboratory<br>
1 Cyclotron Road, M/S 33R0345<br>
Berkeley, CA 94720<br>
</span>Tel: <a href="tel:%28510%29%20486-5709" value="+15104865709">(510) 486-5709</a><tel:%28510%29%20486-5709><br>
Fax: <a href="tel:%28510%29%20486-5909" value="+15104865909">(510) 486-5909</a><tel:%28510%29%20486-5909><br>
Web: <a href="https://phenix-online.org" rel="noreferrer" target="_blank">https://phenix-online.org</a><<a href="https://phenix-online.org/" rel="noreferrer" target="_blank">http<wbr>s://phenix-online.org/</a>><br>
<span class=""><br>
On Wed, Oct 12, 2016 at 5:59 AM, <<a href="mailto:markus.gerstel@diamond.ac.uk">markus.gerstel@diamond.ac.uk</a><<wbr>mailto:<a href="mailto:markus.gerstel@diamond.ac.uk">markus.gerstel@diamond.<wbr>ac.uk</a>>> wrote:<br>
Hi,<br>
<br>
Looking at <a href="https://www.phenix-online.org/download/nightly_builds.cgi" rel="noreferrer" target="_blank">https://www.phenix-online.org/<wbr>download/nightly_builds.cgi</a> there is now a 1.11 build without 'rc' suffix available. Are we now in the one week cooling off period?<br>
Will revive the move-to-git-schedule once we know more on this...<br>
<br>
As one of the first post-phenix-release changes I would like to upgrade bootstrap from installing python 2.7.8 to python >=2.7.9. For obvious reasons I would suggest going directly to the current stable 2.7.12.<br>
Are there any concerns regarding this?<br>
<br>
-Markus<br>
<br>
______________________________<wbr>__<br>
</span>From: <a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-online.<wbr>org</a><mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@<wbr>phenix-online.org</a>> [<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-bounces@phenix-<wbr>online.org</a><mailto:<a href="mailto:cctbxbb-bounces@phenix-online.org">cctbxbb-<wbr>bounces@phenix-online.org</a>>] on behalf of <a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.ac.uk</a><<wbr>mailto:<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.<wbr>ac.uk</a>> [<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.ac.uk</a><<wbr>mailto:<a href="mailto:Graeme.Winter@diamond.ac.uk">Graeme.Winter@diamond.<wbr>ac.uk</a>>]<br>
<span class="">Sent: Friday, October 07, 2016 14:07<br>
</span>To: <a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.org</a><<wbr>mailto:<a href="mailto:cctbxbb@phenix-online.org">cctbxbb@phenix-online.<wbr>org</a>><br>
<span class="">Subject: [cctbxbb] Monthly "how far are we from moving to git" message<br>
<br>
Good afternoon / morning / evening (depending on your locale)<br>
<br>
I’m just running a bootstrap build and having to check out the whole of cctbx one … file … at … a … time from svn & it reminded me we were going to move over to git at some point – ISTR was determined by the PHENIX release.<br>
<br>
Just wondering how this is going & how long it is likely to be until we can get this ball rolling :)<br>
<br>
Thanks & best wishes Graeme<br>
<br>
<br>
<br>
--<br>
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