<div dir="ltr">that code hasn't changed in 5 years, so how can an error suddenly appear?<div>Nick</div></div><div class="gmail_extra"><br clear="all"><div><div class="gmail_signature" data-smartmail="gmail_signature"><div dir="ltr"><div><div dir="ltr"><div><div dir="ltr"><div>Nicholas K. Sauter, Ph. D.<br>Senior Scientist, Molecular Biophysics & Integrated Bioimaging Division<div>Lawrence Berkeley National Laboratory<br>1 Cyclotron Rd., Bldg. 33R0345<br>Berkeley, CA 94720<br>(510) 486-5713<br></div></div></div></div></div></div></div></div></div>
<br><div class="gmail_quote">On Sun, Jul 16, 2017 at 10:57 PM, <span dir="ltr"><<a href="mailto:Graeme.Winter@diamond.ac.uk" target="_blank">Graeme.Winter@diamond.ac.uk</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Exhibit A:<br>
<br>
libtbx.python "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/tst.py"<br>
rstbx.simage.explore_<wbr>completeness d_min=10<br>
rstbx.simage.explore_<wbr>completeness d_min=10 intensity_symmetry=P4 use_symmetry=True multiprocessing=True<br>
rstbx.simage.solver d_min=5<br>
rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=R3:R<br>
rstbx.simage.solver d_min=5 lattice_symmetry=R32:R intensity_symmetry=P1<br>
rstbx.simage.solver d_min=5 lattice_symmetry=P422 intensity_symmetry=P4 index_and_integrate=True multiprocessing=True<br>
Traceback (most recent call last):<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/tst.py", line 273, in <module><br>
run(args=sys.argv[1:])<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/tst.py", line 269, in run<br>
exercise_solver()<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/tst.py", line 255, in exercise_solver<br>
"index_and_integrate=True", "multiprocessing=True"])<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/tst.py", line 213, in run<br>
command=cmd, stdout_splitlines=False).<wbr>raise_if_errors().stdout_<wbr>buffer<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/libtbx/<wbr>easy_run.py", line 39, in raise_if_errors<br>
raise Error(msg)<br>
RuntimeError: child process stderr output:<br>
command: 'rstbx.simage.solver d_min=5 lattice_symmetry=P422 intensity_symmetry=P4 index_and_integrate=True multiprocessing=True'<br>
Traceback (most recent call last):<br>
File "/Users/graeme/svn/cctbx/<wbr>build/../modules/cctbx_<wbr>project/rstbx/command_line/<a href="http://simage.solver.py" rel="noreferrer" target="_blank">sim<wbr>age.solver.py</a>", line 5, in <module><br>
run(args=sys.argv[1:])<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/solver.py", line 1161, in run<br>
return run_fresh(args)<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/solver.py", line 1145, in run_fresh<br>
process(work_params, i_calc)<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/solver.py", line 1088, in process<br>
process_core(work_params, i_calc.p1_anom, reindexing_assistant, image_mdls)<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/solver.py", line 985, in process_core<br>
work_params, reindexing_assistant, image_mdls, usables)<br>
File "/Users/graeme/svn/cctbx/<wbr>modules/cctbx_project/rstbx/<wbr>simage/solver.py", line 883, in build_image_cluster<br>
raise RuntimeError("Insufficient connectivity between images.")<br>
RuntimeError: Insufficient connectivity between images.<br>
usr+sys time: 0.78 seconds, ticks: 777467, micro-seconds/tick: 1.003<br>
wall clock time: 6.99 seconds<br>
<br>
OS X & RHEL6<br>
<br>
Any volunteers?<br>
<br>
Cheers Graeme<br>
<span class="HOEnZb"><font color="#888888"><br>
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