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<p class="MsoNormal">Hi everyone,<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">You may find that with the latest cctbx_project updates your libtbx.configure / make reconf crashes with<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas">(...)<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas"> File "(..)/modules/annlib_adaptbx/libtbx_refresh.py", line 6<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas"> print message<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas"> ^<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas">SyntaxError: invalid syntax<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas">make: *** [reconf] Error 1<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Solution:<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Changes are required in annlib_adaptbx, and you do not have the latest version on your system.<o:p></o:p></p>
<p class="MsoNormal">Please run<o:p></o:p></p>
<p class="MsoNormal"><span style="font-family:Consolas"> cd $(libtbx.find_in_repositories annlib_adaptbx)/..<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas"> rm -rf annlib_adaptbx<o:p></o:p></span></p>
<p class="MsoNormal"><span style="font-family:Consolas"> git clone https://github.com/cctbx/annlib_adaptbx.git<o:p></o:p></span></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Background:<o:p></o:p></p>
<p class="MsoNormal">This is related to my earlier email attached below. I couldn't figure out how to update the static tarball of annlib_adaptbx myself, and found it easier to just convert the repository including history. Said repository now lives at
<a href="https://github.com/cctbx/annlib_adaptbx">https://github.com/cctbx/annlib_adaptbx</a>. Bootstrap has been updated to pull from this location.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">To avoid duplication the old repository copy we kept at <a href="https://github.com/dials/annlib_adaptbx">
https://github.com/dials/annlib_adaptbx</a> for DIALS release control now points there, too. I note there is another copy at
<a href="https://github.com/cctbx-xfel/annlib_adaptbx/network">https://github.com/cctbx-xfel/annlib_adaptbx/network</a> where you may also want to change the existing labels to the correct commit tree. Whoever maintains this – let me know if you want any help.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Builds are still running but it looks like this is the only bit which may require intervention on your end.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">-Markus<o:p></o:p></p>
<p class="MsoNormal"><a name="_MailEndCompose"><span style="color:#1F497D"><o:p> </o:p></span></a></p>
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<p class="MsoNormal"><b><span lang="EN-US" style="mso-fareast-language:EN-GB">From:</span></b><span lang="EN-US" style="mso-fareast-language:EN-GB"> cctbxbb-bounces@phenix-online.org [mailto:cctbxbb-bounces@phenix-online.org]
<b>On Behalf Of </b>markus.gerstel@diamond.ac.uk<br>
<b>Sent:</b> 16 January 2018 09:29<br>
<b>To:</b> cctbxbb@phenix-online.org<br>
<b>Subject:</b> [cctbxbb] new requirements for libtbx_refresh.py<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">Hello everyone,<o:p></o:p></p>
<p class="MsoNormal">There will soon be a requirement for all libtbx_refresh.py and run_tests.py of cctbx modules to contain the line<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><b>from __future__ import absolute_import, division, print_function<o:p></o:p></b></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">I have modified those that I have write access to (everything in cctbx_project, all default modules, dials*, labelit*, phenix*, xia2*), but there may be others that I am not aware of/do not use/do not have access to.<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">(While you are at it ideally you would want to make sure these files are valid Python2 and 3 code, but that is not strictly required at this time.)<o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">For more information on the patch that requires this change see
<a href="https://github.com/cctbx/cctbx_project/commit/ecd7192930961fde31c4ba29a049bc8675ea6885">
https://github.com/cctbx/cctbx_project/commit/ecd7192930961fde31c4ba29a049bc8675ea6885</a><o:p></o:p></p>
<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal">-Markus<o:p></o:p></p>
<p><o:p> </o:p></p>
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<p align="justify"> </p>
<p align="justify">-- </p>
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